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| Content Provider | Springer Nature : BioMed Central |
|---|---|
| Author | Luo, Cheng-Ying Lu, Yao Su, Lei Liu, Jia-Jia Miao, Jia-Yun Lin, Yi-Cen Lin, Lian-Bing |
| Abstract | Background On the one hand, Armillaria is regarded as a plant disease that causes serious root rot of forest trees, on the other hand, Armillaria is also an important symbiotic fungi of the valuable Chinese herb Gastrodia elata. Currently, the whole genome database of Armillaria is relatively limited, and it is expected that a more comprehensive understanding of the symbiotic interactions between Armillaria and G. elata can be achieved through genome-wide comparisons and functional annotations. Whole genome sequencing of Armillaria gallica M3 strain was performed using Oxford Nanopore Technologies sequencing platform, and the sequencing data were used to perform genome assembly, gene prediction and functional annotation, carbohydrate-active enzymes, and host–pathogen interactions using bioinformatics methods. Results In this study, we obtained an 83.33 M genome of A. gallica M3 strain, which consisted of 38 overlapping clusters with an N50 of 6,065,498 bp and a GC content of 47.43%. A total of 12,557 genes were identified in the genome of A. gallica M3, and the repetitive sequences accounted for about 44.36% of the genome. 42.26% of the genome was composed of glycoside hydrolases (GHs), 16.15% of the genome was composed of glycosyltransferases (GTs). In addition, 3412 genes in A. gallica M3 were involved in the host–pathogen interaction mechanism. Conclusions These results have elucidated the characteristics of A. gallica M3 from a genomic perspective to a certain extent. They help to analyze the inner mechanism of A. gallica M3 being able to symbiosis with G. elata at the genomic level, which is of great significance to the next related research of A. gallica M3. |
| Related Links | https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/s12864-024-10897-9.pdf |
| Ending Page | 12 |
| Page Count | 12 |
| Starting Page | 1 |
| File Format | HTM / HTML |
| ISSN | 14712164 |
| DOI | 10.1186/s12864-024-10897-9 |
| Journal | BMC Genomics |
| Issue Number | 1 |
| Volume Number | 26 |
| Language | English |
| Publisher | BioMed Central |
| Publisher Date | 2025-03-31 |
| Access Restriction | Open |
| Subject Keyword | Life Sciences Microarrays Proteomics Animal Genetics and Genomics Microbial Genetics and Genomics Plant Genetics and Genomics Armillaria Gastrodia elata Symbiosis Genome Mechanism analysis |
| Content Type | Text |
| Resource Type | Article |
| Subject | Biotechnology Genetics |
| Journal Impact Factor | 3.5/2023 |
| 5-Year Journal Impact Factor | 4.1/2023 |
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