NDLI: Genetic analysis across life stages of Metrodorea nigra (Rutaceae) in a population located in an urban landscape of Southeastern Brazil using a new set of microsatellite markers

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Genetic analysis across life stages of Metrodorea nigra (Rutaceae) in a population located in an urban landscape of Southeastern Brazil using a new set of microsatellite markers

Brazilian Journal of Botany : Volume 39, Issue 1, March 2016

Brazilian Journal of Botany : Volume 38

Brazilian Journal of Botany : Volume 37

Brazilian Journal of Botany : Volume 36

Genetic analysis across life stages of Metrodorea nigra (Rutaceae) in a population located in an urban landscape of Southeastern Brazil using a new set of microsatellite markers

Content Provider	Springer Nature Link
Author	Moraes Filho, Rômulo M. Alzate Marin, Ana Lilia Nazareno, Alison Gonçalves Bonifacio Anacleto, Fernando Machado, Gabriel Pinheiro
Copyright Year	2016
Abstract	Metrodorea nigra A. St.-Hil. (Rutaceae) is a submontane tropical tree species that develops preferably in the shade and innermost preserved regions of the semi-deciduous forests of Brazil; as a result, its presence can indicate good levels of conservation. Therefore, it is important to have a set of molecular markers to facilitate genetic studies on this species of tree. The goal of this study was to perform genetic analyses of three generations of one population of M. nigra located in an urban landscape (Ribeirão Preto, São Paulo state) using a new set of microsatellite molecular markers (i.e., SSR—simple sequence repeat). A genomic library was developed from M. nigra, and 11 putative molecular markers were isolated and characterized using samples from different life stages. Seven SSR markers amplified and showed polymorphism across 61 M. nigra samples. A total of 83 alleles were detected, with an average of 11.85 alleles per locus. The genetic diversity index (He) across M. nigra generations was high and ranged from a mean of 0.804 (saplings) to 0.827 (adults). These results show the resilience of M. nigra population located in Bosque Municipal de Ribeirão Preto-SP, Brazil, to adverse effects of fragmentation, and can serve as a base for conservation programs. Furthermore, more than 50 % of the primers were also amplified for the congeneric tree species Metrodorea stipularis. Overall, the new marker set developed here will be useful for studies of population genetics of M. nigra and other key tree species from the Atlantic Rainforest of Brazil.
Starting Page	795
Ending Page	799
Page Count	5
File Format	PDF
ISSN	01008404
Journal	Brazilian Journal of Botany
Volume Number	39
Issue Number	2
e-ISSN	18069959
Language	English
Publisher	Springer International Publishing
Publisher Date	2016-02-26
Publisher Place	Cham
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Metrodorea nigra Metrodorea stipularis Plant Systematics/Taxonomy/Biogeography Carrapateira Rutaceae Forest conservation Genetic diversity Simple sequence repeats
Content Type	Text
Resource Type	Article
Subject	Plant Science

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