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Genes & Genomics : Volume 36, Issue 6, December 2014

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Soybean mitogen-activated protein kinase GMK2 is activated with GMK1 in Bradyrhizobium-Soybean interactions

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A bZIP transcription factor, LrbZIP1, is involved in Lilium regale Wilson defense responses against Fusarium oxysporum f. sp. lilii

Genome-wide comparative analysis of flowering genes between Arabidopsis and mungbean

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Genome-wide comparative analysis of flowering genes between Arabidopsis and mungbean

Content Provider	Springer Nature Link
Author	Kim, Sue K. Lee, Taeyoung Kang, Yang Jae Hwang, Won Joo Kim, Kil Hyun Moon, Jung Kyung Kim, Moon Young Lee, Suk Ha
Copyright Year	2014
Abstract	Mungbean is one of the major crops grown in South, East and Southeast Asia because of a high quality of amino acid profile; however, its asynchronous flowering time makes difficult to harvest at a time. Synchronization of flowering time is important to reduce labor costs for harvesting. With the availability of next generation sequencing data of mungbean, we approached a strategy of comparative genomics to identify mungbean homologous counterpart of A. thaliana genes that are known to be involved in flowering pathways, followed by a comparative soybean quantitative trait loci (QTL) analysis of the putative mungbean flowering-related genes. Co-localization of mungbean QTL associated with days to first flower day (FLD) was also identified using the EST-SSR markers from a previous study. Additionally, based on the mungbean transcriptome data with a distinct flowering stage of R2, FPKM (Fragments Per Kilobase per Million mapped reads) expression analysis of all the genes found in paralogous synteny blocks was conducted to examine expression patterns of the genes that have undergone a whole genome duplication event. Our results indicate that the paralogous flowering genes along with other genes within a same synteny block have evolved together at the macro-synteny scale. This study provides insights into mungbean flowering genes, in which they can be used as tools in order to improve flowering synchronization and to increase yield.
Starting Page	799
Ending Page	808
Page Count	10
File Format	PDF
ISSN	19769571
Journal	Genes & Genomics
Volume Number	36
Issue Number	6
e-ISSN	20929293
Language	English
Publisher	The Genetics Society of Korea
Publisher Date	2014-08-26
Publisher Place	Seoul
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Mungbean Comparative mapping Quantitative trait loci Comparative genomics FPKM Whole genome duplication Microbial Genetics and Genomics Plant Genetics & Genomics Animal Genetics and Genomics Human Genetics
Content Type	Text
Resource Type	Article
Subject	Genetics Biochemistry Molecular Biology

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