NDLI: Microsatellite loci in the oceanic whitetip shark and cross-species amplification using pyrosequencing technology

Content Provider	Springer Nature Link
Author	Mendes, N. J. Cruz, V. P. Mendonça, Fernando Fernandes Pardo, B. G. Coelho, R. Ashikaga, F. Y. Camargo, S. M. Martínez, P. Oliveira, C. Santos, M. N. Foresti, F.
Copyright Year	2015
Abstract	Among the pelagic shark species most impacted by fisheries, the oceanic whitetip shark (Carcharhinus longimanus) has shown signs of population declines. In this study, we developed 12 microsatellite markers using next generation sequencing (454 pyrosequencing) in C. longimanus for further use in population screening. The genetic diversity of these loci was assessed in 28 individuals and a total of 35 alleles were identified, ranging from four to eight alleles per locus (5.9 alleles on average). Cross-species amplification of these markers was successful in five loci for C. acronotus, C. perezi and Galeocerdo cuvier. The developed microsatellite markers will be useful in analyzing the population genetics structure of the oceanic whitetip shark and other Carcharhinidae species.
Starting Page	585
Ending Page	589
Page Count	5
File Format	PDF
ISSN	18777252
Journal	Conservation Genetics Resources
Volume Number	7
Issue Number	2
e-ISSN	18777260
Language	English
Publisher	Springer Netherlands
Publisher Date	2015-02-19
Publisher Place	Dordrecht
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Conservation Population genetics Next generation sequencing Carcharhinus Conservation Biology/Ecology Plant Sciences Animal Anatomy Morphology Histology Evolutionary Biology
Content Type	Text
Resource Type	Article
Subject	Genetics Ecology, Evolution, Behavior and Systematics

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in

Characterisation and cross-amplification of 19 novel microsatellite loci for the sandbar shark, Carcharhinus plumbeus

Characterisation and cross-amplification of 21 novel microsatellite loci for the dusky shark, Carcharhinus obscurus

Development and characterization of 10 polymorphic microsatellite loci for the blue shark, Prionace glauca, and their cross shark-species amplification

Isolation and characterization of eighteen polymorphic microsatellite DNA loci from masu salmon (Oncorhynchus masou) using next-generation sequencing and cross-species amplification

Development and characterization of microsatellite markers for the finetooth shark, Carcharhinus isodon

Isolation and characterization of 20 microsatellite markers from Carcharhinus leucas (bull shark) and cross-amplification in Galeocerdo cuvier (tiger shark), Carcharhinus obscurus (dusky shark) and Carcharhinus plumbeus (sandbar shark)

Development of novel microsatellite DNA markers for toad-headed agama Phrynocephalus vlangalii using next generation sequencing

Isolation and characterization of twelve polymorphic microsatellite loci in Polygonatum cyrtonema and cross-species amplification

Development of microsatellite loci for Pelophylax plancyi and cross-amplification in other ranid species

Microsatellite loci in the oceanic whitetip shark and cross-species amplification using pyrosequencing technology

Similar Documents

Characterisation and cross-amplification of 19 novel microsatellite loci for the sandbar shark, Carcharhinus plumbeus

Characterisation and cross-amplification of 21 novel microsatellite loci for the dusky shark, Carcharhinus obscurus

Development and characterization of 10 polymorphic microsatellite loci for the blue shark, Prionace glauca, and their cross shark-species amplification

Isolation and characterization of eighteen polymorphic microsatellite DNA loci from masu salmon (Oncorhynchus masou) using next-generation sequencing and cross-species amplification

Development and characterization of microsatellite markers for the finetooth shark, Carcharhinus isodon

Isolation and characterization of 20 microsatellite markers from Carcharhinus leucas (bull shark) and cross-amplification in Galeocerdo cuvier (tiger shark), Carcharhinus obscurus (dusky shark) and Carcharhinus plumbeus (sandbar shark)

Development of novel microsatellite DNA markers for toad-headed agama Phrynocephalus vlangalii using next generation sequencing

Isolation and characterization of twelve polymorphic microsatellite loci in Polygonatum cyrtonema and cross-species amplification

Development of microsatellite loci for Pelophylax plancyi and cross-amplification in other ranid species

Microsatellite loci in the oceanic whitetip shark and cross-species amplification using pyrosequencing technology