NDLI: Development and characterization of 32 SNP markers for the northern snakehead (Channa argus) using high resolution melting (HRM)

Content Provider	Springer Nature Link
Author	Zhang, Bo Chi Zhang, Gui Rong Ji, Wei Yang, Rui Bin Zou, Gui Wei Chen, Kun Ci Wei, Kai Jian Gardner, Jonathan P. A.
Copyright Year	2017
Abstract	Channa argus is an important commercial fish species in the aquaculture industry in China, however, it is declining in numbers and population size due to overfishing and environmental change. Based on the transcriptome database of C. argus from the Illumina Hiseq 2000 platform, 32 polymorphic single nucleotide polymorphism (SNP) markers were developed and characterized in 36 individuals using high resolution melting analysis. The observed and expected heterozygosities ranged from 0 to 0.694 and from 0.106 to 0.507, respectively, and the minor allele frequency ranged from 0.056 to 0.486. Only two loci showed significant deviation from Hardy–Weinberg equilibrium after Bonferroni correction. These SNP markers will serve as a valuable tool for population genetic analysis, natural resource conservation and selective breeding of this species.
Starting Page	631
Ending Page	634
Page Count	4
File Format	PDF
ISSN	18777252
Journal	Conservation Genetics Resources
Volume Number	9
Issue Number	4
e-ISSN	18777260
Language	English
Publisher	Springer Netherlands
Publisher Date	2017-04-13
Publisher Place	Dordrecht
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Channa argus Single nucleotide polymorphisms (SNPs) High resolution melting analysis Transcriptome Conservation Biology/Ecology Ecology Biodiversity Evolutionary Biology Plant Genetics and Genomics Animal Genetics and Genomics
Content Type	Text
Resource Type	Article
Subject	Genetics Ecology, Evolution, Behavior and Systematics

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