NDLI: Genetic diversity and population structure of pear (Pyrus spp.) collections revealed by a set of core genome-wide SSR markers

Content Provider	Springer Nature Link
Author	Liu, Qingwen Song, Yue Liu, Lun Zhang, Mingyue Sun, Jiangmei Zhang, Shaoling Wu, Jun
Copyright Year	2015
Abstract	Pear is one of the most important temperate fruits, with high genetic diversity, but controversial classification for some genotypes or species. Our study evaluates the polymorphism of 385 pear resources belonging to five cultivated species or interspecies of Pyrus, based on a set of 134 core simple sequence repeat (SSR) markers. A total of 690 variant alleles were detected, from 2 to 12 per locus, with an average of 5.45, as well as 30 rare alleles. The clustering relationship divided the pear genotypes into three groups, with the primary division between occidental and oriental pears, revealing separate evolution processes, followed by division of Pyrus ussuriensis, Pyrus pyrifolia, and Pyrus bretschneideri. Population structure analysis with K values of 2 to 8 reflected a clear genetic composition within different genotypes, supporting Pyrus sinkiangensis as a hybrid of oriental and occidental pears and P. pyrifolia and P. bretschneideri sharing a common ancestor. However, the division of genetic components also revealed separate evolution at the different geographic and environmental conditions of South China and North China. The varieties “Pingguoli” and “Chaoxianyangli,” which currently have controversial classification, were classified into P. bretschneideri and Pyrus communis, respectively. A core collection of 88 accessions was chosen, covering all of the rare alleles and 95.54 % of all alleles. The high-quality and comprehensive evaluation of a wide range of pear cultivars by core SSR markers covering the whole genome demonstrated their excellent application for the study of genetic diversity, genetic relationships, and building a core collection for pear.
Starting Page	1
Ending Page	22
Page Count	22
File Format	PDF
ISSN	16142942
Journal	Tree Genetics & Genomes
Volume Number	11
Issue Number	6
e-ISSN	16142950
Language	English
Publisher	Springer Berlin Heidelberg
Publisher Date	2015-11-14
Publisher Place	Berlin, Heidelberg
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Pear (Pyrus spp.) Core SSR markers Genetic diversity Genetic structure Core collection Forestry Plant Genetics & Genomics Plant Breeding/Biotechnology Tree Biology Biotechnology
Content Type	Text
Resource Type	Article
Subject	Genetics Molecular Biology Horticulture Forestry

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in

Genetic variation and population structure of “Zangli” pear landraces in Tibet revealed by SSR markers

Genetic diversity and structure of Pyrus accessions of Indian Himalayan region based on morphological and SSR markers

Worldwide core collections of tea (Camellia sinensis) based on SSR markers

Diversity distribution and population structure of tea germplasms in China revealed by EST-SSR markers

Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai)

Complete sequence of the chloroplast genome from pear (Pyrus pyrifolia): genome structure and comparative analysis

Genetic mapping of Cacopsylla pyri resistance in an interspecific pear (Pyrus spp.) population

The genetic diversity and introgression of Juglans regia and Juglans sigillata in Tibet as revealed by SSR markers

Genetic variation and diversity among loquat accessions

Genetic diversity and population structure of pear (Pyrus spp.) collections revealed by a set of core genome-wide SSR markers

Similar Documents

Genetic variation and population structure of “Zangli” pear landraces in Tibet revealed by SSR markers

Genetic diversity and structure of Pyrus accessions of Indian Himalayan region based on morphological and SSR markers

Worldwide core collections of tea (Camellia sinensis) based on SSR markers

Diversity distribution and population structure of tea germplasms in China revealed by EST-SSR markers

Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai)

Complete sequence of the chloroplast genome from pear (Pyrus pyrifolia): genome structure and comparative analysis

Genetic mapping of Cacopsylla pyri resistance in an interspecific pear (Pyrus spp.) population

The genetic diversity and introgression of Juglans regia and Juglans sigillata in Tibet as revealed by SSR markers

Genetic variation and diversity among loquat accessions

Genetic diversity and population structure of pear (Pyrus spp.) collections revealed by a set of core genome-wide SSR markers