NDLI: Genome-Wide Analysis and Expression Patterns of NAC Transcription Factor Family Under Different Developmental Stages and Abiotic Stresses in Chinese Cabbage

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Genome-Wide Analysis and Expression Patterns of NAC Transcription Factor Family Under Different Developmental Stages and Abiotic Stresses in Chinese Cabbage

Content Provider	Springer Nature Link
Author	Liu, Tongkun Song, Xiaoming Duan, Weike Huang, Zhinan Liu, Gaofeng Li, Ying Hou, Xilin
Copyright Year	2014
Abstract	NAC (NAM, ATAF1/2 and CUC2) proteins represent a major plant-specific transcription factor (TF) family and are expressed in various developmental stages and tissues. In this study, 204 NAC genes, including 17 membrane-bound TFs, were identified in the Brassica rapa (Chinese cabbage) genome. The gene structure and motif compositions obtained suggest that the BrNAC gene family is classified broadly into eight groups. The predicted Chinese cabbage NAC genes were distributed in ten chromosomes at various densities but mainly in chromosomes 3 and 10 (14 and 14 %, respectively). A comprehensive analysis of NAC family genes in Chinese cabbage, rice and Arabidopsis was also performed. Phylogenetic analysis of BrNACs, along with their Arabidopsis and rice counterparts, divided the proteins into two major groups (A and B) and 19 subgroups. Homologous, paralogous, and orthologous searches of Chinese cabbage and Arabidopsis revealed gene loss during genome triplication in Chinese cabbage. Finally, the expression of 55 selected Chinese cabbage BrNAC genes was analyzed under different developmental stages and abiotic stress conditions (heat, cold, ABA, GA, and PEG). The selected genes were classified into three types (constitutive expression, no-expression, and period-specific expression) according to their expression profiles, which indicate that the NAC genes are involved in various aspects of the physiological and developmental processes of Chinese cabbage. Under different abiotic stress conditions, several members of BrNACs were upregulated by various abiotic stresses. Our study provides a very useful reference for functional analysis of members of BrNAC gene family in Chinese cabbage.
Starting Page	1041
Ending Page	1056
Page Count	16
File Format	PDF
ISSN	07359640
Journal	Plant Molecular Biology Reporter
Volume Number	32
Issue Number	5
e-ISSN	15729818
Language	English
Publisher	Springer US
Publisher Date	2014-03-15
Publisher Place	Boston
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Chinese cabbage Genome-wide analysis NAC (NAM, ATAF1/2 and CUC2) Transcription factor Plant Sciences Plant Breeding/Biotechnology Proteomics Metabolomics Bioinformatics
Content Type	Text
Resource Type	Article
Subject	Plant Science Molecular Biology

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