NDLI: Attenuation regulation of the amino acid and aminoacyl-tRNA biosynthesis operons in bacteria: A comparative genomic analysis

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Attenuation regulation of the amino acid and aminoacyl-tRNA biosynthesis operons in bacteria: A comparative genomic analysis

Content Provider	Springer Nature Link
Author	Lopatovskaya, K. V. Seliverstov, A. V. Lyubetsky, V. A.
Copyright Year	2010
Abstract	A large-scale search for attenuation regulation in bacteria was performed using two original computer programs, which modeled the attenuation regulation and multiple alignment along a phylogenetic tree. The programs are available at http://lab6.iitp.ru. Candidate attenuations were predicted for many organisms belonging to α-, ß-, γ-, and δ-proteobacteria, Actinobacteria, Bact eroidetes/Chlorobi, Firmicutes, and Thermotoga; in Cloroflexi, the corresponding sites were found upstream of hisG, hisZ, hisS, pheA, pheST, trpEG, trpA, trpB, trpE, trpS, thrA, thrS, leuA, leuS, ilvB, ilvI, ilvA, ilvC, ilvD, and ilvG. Searches were conducted across all bacterial genomes contained in GenBank, NCBI. Other bacterial taxa were not predicted to have attenuation. It was possible to assume, in some cases, that RNA triplexes play a substantial role in the formation of an active antiterminator and terminator or pseudoknots during termination. The attenuation regulation of Lactobacillus lactis lysQ was assumed to depend on the histidyl-tRNA concentration. Several types of attenuation regulation and the evolution of attenuation are discussed.
Starting Page	128
Ending Page	139
Page Count	12
File Format	PDF
ISSN	00268933
Journal	Molecular Biology
Volume Number	44
Issue Number	1
e-ISSN	16083245
Language	English
Publisher	SP MAIK Nauka/Interperiodica
Publisher Date	2010-03-04
Publisher Place	Dordrecht
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	gene expression in bacteria attenuation regulation large-scale searches attenuation prediction algorithms tree-based multiple alignment algorithms Human Genetics Biochemistry Life Sciences
Content Type	Text
Resource Type	Article
Subject	Structural Biology Biophysics

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