NDLI: Amycolatopsis umgeniensis sp. nov., isolated from soil from the banks of the Umgeni River in South Africa

Content Provider	Springer Nature Link
Author	Everest, Gareth J. Roes Hill, Marilize Omorogie, Clifford Cheung, Shuk Kwan Cook, Andrew E. Goodwin, Candice M. Meyers, Paul R.
Copyright Year	2012
Abstract	A novel member of the genus Amycolatopsis was isolated from soil collected from the banks of the Umgeni River, KwaZulu Natal province, South Africa. The strain, designated UM16T, grouped with the type strains of Amycolatopsis alba, Amycolatopsis coloradensis and Amycolatopsis thailandensis by 16S rRNA gene based phylogeny. Genetic distance values, based on the gyrB and recN genes, between strain UM16T and its closest relatives were all above the threshold values of 0.02 and 0.04, respectively, that have been proposed to distinguish Amycolatopsis type strains. DNA–DNA hybridisation experiments confirmed that strain UM16T represents a unique genomic species, sharing 18.4 ± 5.1, 16.2 ± 1.8 and 45.8 ± 8.9 % DNA relatedness to the type strains of A. alba, A. coloradensis and A. thailandensis, respectively. The physiological, phylogenetic and DNA-relatedness data support the description of strain UM16T as the type strain of a novel species, for which the name Amycolatopsis umgeniensis sp. nov. is proposed (= DSM 45272T = NRRL B-24724T).
Starting Page	673
Ending Page	681
Page Count	9
File Format	PDF
ISSN	00036072
Journal	Antonie van Leeuwenhoek
Volume Number	103
Issue Number	3
e-ISSN	15729699
Language	English
Publisher	Springer Netherlands
Publisher Date	2012-11-20
Publisher Place	Dordrecht
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Nocardioform actinomycetes gyrB recN Genetic distance South Africa Microbiology Medical Microbiology Plant Sciences Soil Science & Conservation
Content Type	Text
Resource Type	Article
Subject	Medicine Molecular Biology Microbiology

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