NDLI: Kocuria subflava sp. nov., isolated from marine sediment from the Indian Ocean

Content Provider	Springer Nature Link
Author	Jiang, Zhao Zhang, Wei Hua Yuan, Chang Guo Chen, Jia Yang Cao, Li Xiang Park, Dong Jin Xiao, Min Kim, Chang Jin Li, Wen Jun
Copyright Year	2015
Abstract	A novel Gram-staining positive, catalase-positive, oxidase-negative, aerobic, non-motile coccus, designated strain YIM 13062T, was isolated from a marine sediment sample collected from the Indian Ocean. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain YIM 13062T belongs to the genus Kocuria, and is closely related to Kocuria polaris NBRC 103063T (97.8 % similarity), Kocuria rosea NBRC 3768T (97.6 % similarity) and Kocuria carniphila JCM 14118T (97.4 % similarity). The strain grew optimally at 28 °C, pH 8.0 and in the presence of 2–4 % (w/v) NaCl. Cell-wall peptidoglycan type was Lys–Ala3 (type A3α). The major isoprenoid quinones were MK-6(H2) and MK-7(H2). The polar lipids of strain YIM 13062T consisted of diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), one unidentified phospholipid (PL), one unidentified aminophospholipid (APL), two unidentified aminolipids (AL) and four unidentified lipids (L). Major fatty acids of the novel isolate were anteiso-C15:0, iso-C14:0 and C18:1 2OH. The genomic DNA G+C content of strain YIM 13062T was 68.0 mol%. The level of DNA–DNA relatedness between strain YIM 13062T and K. polaris NBRC 103063T, K. rosea NBRC 3768T, K. carniphila JCM 14118T were 53.2, 48.8 and 42.6 %, respectively. On the basis of genotypic and phenotypic data, it is apparent that strain YIM 13062T represents a novel species of the genus Kocuria, for which the name Kocuria subflava sp. nov. is proposed. The type strain is YIM 13062T (=CGMCC 4.7252T=KCTC 39547T).
Starting Page	1349
Ending Page	1355
Page Count	7
File Format	PDF
ISSN	00036072
Journal	Antonie van Leeuwenhoek
Volume Number	108
Issue Number	6
e-ISSN	15729699
Language	English
Publisher	Springer International Publishing
Publisher Date	2015-09-11
Publisher Place	Cham
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Kocuria subflava sp. nov. 16S rRNA gene Polyphasic taxonomy Indian Ocean Microbiology Medical Microbiology Plant Sciences Soil Science & Conservation
Content Type	Text
Resource Type	Article
Subject	Medicine Molecular Biology Microbiology

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