NDLI: Transcriptional response to heat shock in liver of snow trout (Schizothorax richardsonii)

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Transcriptome dynamics of a susceptible wheat upon Fusarium head blight reveals that molecular responses to Fusarium graminearum infection fit over the grain development processes

Transcriptional response to heat shock in liver of snow trout (Schizothorax richardsonii)—a vulnerable Himalayan Cyprinid fish

An analysis of the validity and utility of the proximon proposition

Functional & Integrative Genomics : Volume 16, Issue 1, January 2016

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Transcriptional response to heat shock in liver of snow trout (Schizothorax richardsonii)—a vulnerable Himalayan Cyprinid fish

Content Provider	Springer Nature Link
Author	Barat, Ashoktaru Sahoo, Prabhati Kumari Kumar, Rohit Goel, Chirag Singh, Atul Kumar
Copyright Year	2016
Abstract	The snow trout (Schizothorax richardsonii) belonging to family Cyprinidae, is an endemic fish of the Himalayan region. The species is tagged as vulnerable species in the IUCN red list of threatened species. The fish thrives well in snowmelt water of several streams and rivers in the region but are occasionally exposed to more than 20 °C during the summer season. Therefore, we have used deep RNA sequencing to decipher the transcriptome of snow trout and characterize the genes and molecular pathways involved in heat shock response. In this study 72,601,298 and 65,428,283 raw reads for heat-shocked and control, respectively, were obtained by Illumina paired-end sequencing technology. The de novo assembled transcriptome was tested for differential gene expression across the treatment groups. The quality of assembly was high with N75 and N50 lengths of 461 and 1274 bases, respectively. A total of 65 unique transcripts were differentially expressed in liver under heat shock and control. Annotated blast matches reveal that differentially expressed transcripts correspond to critical chaperones and molecular pathways, previously shown to be important for thermal stress in other fish species. Eight randomly selected heat-stressed responsive transcripts were also observed to be upregulated during qRT-PCR analysis. This study is the preliminary step to understanding the responses during sudden environmental changes like heat shock. The reference transcriptome database would also aid further studies on biological and physiological aspects of the snow trout under abiotic stresses.
Starting Page	203
Ending Page	213
Page Count	11
File Format	PDF
ISSN	1438793X
Journal	Functional & Integrative Genomics
Volume Number	16
Issue Number	2
e-ISSN	14387948
Language	English
Publisher	Springer Berlin Heidelberg
Publisher Date	2016-01-26
Publisher Place	Berlin, Heidelberg
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Snow trout Abiotic stress RNA sequencing De novo assembly Differential gene expression qRT-PCR analysis Cell Biology Plant Genetics & Genomics Microbial Genetics and Genomics Biochemistry Bioinformatics Animal Genetics and Genomics
Content Type	Text
Resource Type	Article
Subject	Genetics Medicine

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