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| Content Provider | Springer Nature Link |
|---|---|
| Author | Sharma, Rita Agarwal, Pinky Ray, Swatismita Deveshwar, Priyanka Sharma, Pooja Sharma, Niharika Nijhawan, Aashima Jain, Mukesh Singh, Ashok Kumar Singh, Vijay Pal Khurana, Jitendra Paul Tyagi, Akhilesh Kumar Kapoor, Sanjay |
| Copyright Year | 2012 |
| Abstract | Carefully analyzed expression profiles can serve as a valuable reference for deciphering gene functions. We exploited the potential of whole genome microarrays to measure the spatial and temporal expression profiles of rice genes in 19 stages of vegetative and reproductive development. We could verify expression of 22,980 genes in at least one of the tissues. Differential expression analysis with respect to five vegetative tissues and preceding stages of development revealed reproductive stage-preferential/-specific genes. By using subtractive logic, we identified 354 and 456 genes expressing specifically during panicle and seed development, respectively. The metabolic/hormonal pathways and transcription factor families playing key role in reproductive development were elucidated after overlaying the expression data on the public databases and manually curated list of transcription factors, respectively. During floral meristem differentiation (P1) and male meiosis (P3), the genes involved in jasmonic acid and phenylpropanoid biosynthesis were significantly upregulated. P6 stage of panicle, containing mature gametophytes, exhibited enrichment of transcripts involved in homogalacturonon degradation. Genes regulating auxin biosynthesis were induced during early seed development. We validated the stage-specificity of regulatory regions of three panicle-specific genes, OsAGO3, OsSub42, and RTS, and an early seed-specific gene, XYH, in transgenic rice. The data generated here provides a snapshot of the underlying complexity of the gene networks regulating rice reproductive development. |
| Starting Page | 229 |
| Ending Page | 248 |
| Page Count | 20 |
| File Format | |
| ISSN | 1438793X |
| Journal | Functional & Integrative Genomics |
| Volume Number | 12 |
| Issue Number | 2 |
| e-ISSN | 14387948 |
| Language | English |
| Publisher | Springer-Verlag |
| Publisher Date | 2012-03-31 |
| Publisher Place | Berlin, Heidelberg |
| Access Restriction | One Nation One Subscription (ONOS) |
| Subject Keyword | Development Expression Meta-analysis Metabolic pathways Panicle Promoter Seed Transcription factors Bioinformatics Cell Biology Microbial Genetics and Genomics Animal Genetics and Genomics Biochemistry Plant Genetics & Genomics |
| Content Type | Text |
| Resource Type | Article |
| Subject | Genetics Medicine |
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