NDLI: A Candidate Gene Association Study for Growth Performance in an Improved Giant Freshwater Prawn (Macrobrachium rosenbergii) Culture Line

Please wait, while we are loading the content...

Isolation of Lactic Acid Bacteria from Kuruma Shrimp (Marsupenaeus japonicus) Intestine and Assessment of Immunomodulatory Role of a Selected Strain as Probiotic

Symbiotic Association Between Symbiodinium and the Gastropod Strombus gigas: Larval Acquisition of Symbionts

Biodegradation of Shrimp Biowaste by Marine Exiguobacterium sp. CFR26M and Concomitant Production of Extracellular Protease and Antioxidant Materials: Production and Process Optimization by Response Surface Methodology

Modulation of Lipid Metabolism by Deep-Sea Water in Cultured Human Liver (HepG2) Cells

Abundance, Activity, and Diversity of Archaeal and Bacterial Communities in Both Uncontaminated and Highly Copper-Contaminated Marine Sediments

Heritable Targeted Inactivation of the Rainbow Trout (Oncorhynchus mykiss) Master Sex-Determining Gene Using Zinc-Finger Nucleases

Marine Biotechnology : Volume 16, Issue 1, February 2014

Marine Biotechnology : Volume 15

Marine Biotechnology : Volume 14

Marine Biotechnology : Volume 13

Marine Biotechnology : Volume 12

Marine Biotechnology : Volume 11

Marine Biotechnology : Volume 10

Marine Biotechnology : Volume 9

Marine Biotechnology : Volume 8

Marine Biotechnology : Volume 7

Marine Biotechnology : Volume 6

Marine Biotechnology : Volume 5

Marine Biotechnology : Volume 4

Marine Biotechnology : Volume 3

Marine Biotechnology : Volume 2

Marine Biotechnology : Volume 1

A Candidate Gene Association Study for Growth Performance in an Improved Giant Freshwater Prawn (Macrobrachium rosenbergii) Culture Line

Content Provider	Springer Nature Link
Author	Jung, Hyungtaek Lyons, Russell E. Li, Yutao Thanh, Nguyen Minh Dinh, Hung Hurwood, David A. Salin, Krishna R. Mather, Peter B.
Copyright Year	2013
Abstract	A candidate gene approach using type I single nucleotide polymorphism (SNP) markers can provide an effective method for detecting genes and gene regions that underlie phenotypic variation in adaptively significant traits. In the absence of available genomic data resources, transcriptomes were recently generated in Macrobrachium rosenbergii to identify candidate genes and markers potentially associated with growth. The characterisation of 47 candidate loci by ABI re-sequencing of four cultured and eight wild samples revealed 342 putative SNPs. Among these, 28 SNPs were selected in 23 growth-related candidate genes to genotype in 200 animals selected for improved growth performance in an experimental GFP culture line in Vietnam. The associations between SNP markers and individual growth performance were then examined. For additive and dominant effects, a total of three exonic SNPs in glycogen phosphorylase (additive), heat shock protein 90 (additive and dominant) and peroxidasin (additive), and a total of six intronic SNPs in ankyrin repeats-like protein (additive and dominant), rolling pebbles (dominant), transforming growth factor-β induced precursor (dominant), and UTP-glucose-1-phosphate uridylyltransferase 2 (dominant) genes showed significant associations with the estimated breeding values in the experimental animals (P = 0.001 − 0.031). Individually, they explained 2.6 − 4.8 % of the genetic variance (R 2 = 0.026 − 0.048). This is the first large set of SNP markers reported for M. rosenbergii and will be useful for confirmation of associations in other samples or culture lines as well as having applications in marker-assisted selection in future breeding programs.
Starting Page	161
Ending Page	180
Page Count	20
File Format	PDF
ISSN	14362228
Journal	Marine Biotechnology
Volume Number	16
Issue Number	2
e-ISSN	14362236
Language	English
Publisher	Springer US
Publisher Date	2013-10-15
Publisher Place	New York
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Macrobrachium rosenbergii Transcriptome ABI re-sequencing Growth-related candidate genes SNPs Associations Estimated breeding values Freshwater & Marine Ecology Microbiology Zoology Engineering
Content Type	Text
Resource Type	Article
Subject	Aquatic Science Biotechnology

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in

Effects of dietary carbohydrates on growth and body components of the giant freshwater prawn, Macrobrachium rosenbergii

Osmoregulation, growth and moulting cycles of the giant freshwater prawn (Macrobrachium rosenbergii) at different salinities

Yield characteristics and morphometric relationships of giant freshwater prawn, Macrobrachium rosenbergii (de Man, 1879)

Economic analysis of monosex culture of giant freshwater prawn (Macrobrachium rosenbergii De Man): a case study

SELECTIVE BREEDING PROGRAM ON GIANT FRESHWATER PRAWN ( Macrobrachium rosenbergii ) FOR GROWTH RATE

Impact of phased harvesting on population structure, feed intake pattern and growth performance of Macrobrachium rosenbergii DeMan (giant freshwater prawn) in polyculture with carps in concurrent rice–fish culture

River pen culture of giant freshwater prawn Macrobrachium rosenbergii (De Man) in southern Vietnam

Modeling meat yield based on measurements of body traits in genetically improved giant freshwater prawn (GFP) Macrobrachium rosenbergii

Evaluation of cold tolerance and gene expression patterns associated with low-temperature stress in giant freshwater prawn Macrobrachium rosenbergii

A Candidate Gene Association Study for Growth Performance in an Improved Giant Freshwater Prawn (Macrobrachium rosenbergii) Culture Line

Similar Documents

Effects of dietary carbohydrates on growth and body components of the giant freshwater prawn, Macrobrachium rosenbergii

Osmoregulation, growth and moulting cycles of the giant freshwater prawn (Macrobrachium rosenbergii) at different salinities

Yield characteristics and morphometric relationships of giant freshwater prawn, Macrobrachium rosenbergii (de Man, 1879)

Economic analysis of monosex culture of giant freshwater prawn (Macrobrachium rosenbergii De Man): a case study

SELECTIVE BREEDING PROGRAM ON GIANT FRESHWATER PRAWN ( Macrobrachium rosenbergii ) FOR GROWTH RATE

Impact of phased harvesting on population structure, feed intake pattern and growth performance of Macrobrachium rosenbergii DeMan (giant freshwater prawn) in polyculture with carps in concurrent rice–fish culture

River pen culture of giant freshwater prawn Macrobrachium rosenbergii (De Man) in southern Vietnam

Modeling meat yield based on measurements of body traits in genetically improved giant freshwater prawn (GFP) Macrobrachium rosenbergii

Evaluation of cold tolerance and gene expression patterns associated with low-temperature stress in giant freshwater prawn Macrobrachium rosenbergii

A Candidate Gene Association Study for Growth Performance in an Improved Giant Freshwater Prawn (Macrobrachium rosenbergii) Culture Line