NDLI: Isolation and characterization of a new enterovirus F in yak feces in the Qinghai-Tibetan Plateau

Content Provider	Springer Nature Link
Author	He, Huan Tang, Cheng Chen, Xinnuo Yue, Hua Ren, Yupeng Liu, Yan Zhang, Bin
Copyright Year	2016
Abstract	An enterovirus (EV) strain, designated as SWUN-AB001, was isolated in the Qinghai-Tibetan Plateau from a yak with severe diarrheal disease. The complete genome of strain SWUN-AB001 was 7,382 bp in length and shared 35.1–68.5% nt identities with bovine EVs belonging to a candidate new type EV-F7. Using the sequence difference values in the VP1 gene as a criterion for demarcating a new serotype/genotype in the Enterovirus genus, strain SWUN-AB001 had only a 71.1% nt and a 79.2% aa identity, in the VP1 region, with the most closely matched EV, further indicating that a new type of EV had been identified. Phylogenetic analysis of the nt sequence of the viral polyprotein and of VP1 genes demonstrated that the virus fell within the EV-F cluster, but was located in a unique lineage. Furthermore, a large-scale surveillance study indicated that the prevalence of this EV in yaks was 31.05% (95% CI = 25.5–37.6%) in 235 animals with diarrhea and 24.13% (95% CI = 17.4–32.4%) in 116 healthy yaks. However, there was no significant difference in virus prevalence between diarrheal and healthy samples. Interestingly, in the Tibet region, diarrheal feces had a higher incidence of EVs than feces of healthy yaks (odd ratios = 6.03, 95% CI = 1.93–18.86), indicating that the incidence of EV was potentially correlated with the clinical symptom of diarrhea in yaks.
Starting Page	523
Ending Page	527
Page Count	5
File Format	PDF
ISSN	03048608
Journal	Archives of Virology
Volume Number	162
Issue Number	2
e-ISSN	14328798
Language	English
Publisher	Springer Vienna
Publisher Date	2016-10-25
Publisher Place	Vienna
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Yak Enterovirus New type EV-F7 Prevalence Virology Medical Microbiology Infectious Diseases
Content Type	Text
Resource Type	Article
Subject	Virology Medicine

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