NDLI: Use of autosomal loci for clustering individuals and populations of East Asian origin

Please wait, while we are loading the content...

Ten novel mutations in the molybdenum cofactor genes MOCS1 and MOCS2 and in vitro characterization of a MOCS2 mutation that abolishes the binding ability of molybdopterin synthase

Reciprocal translocations: a trap for cytogenetists?

Michael Schmid, Indrajit Nanda (eds): Chromosomes Today, Vol 14, Kluwer, 2004,

Human Genetics : Volume 117, Issue 5, September 2005

Human Genetics : Volume 117, Issue 4, August 2005

Human Genetics : Volume 117, Issue 2-3, July 2005

Human Genetics : Volume 117, Issue 1, June 2005

Human Genetics : Volume 116

Human Genetics : Volume 115

Human Genetics : Volume 114

Human Genetics : Volume 113

Human Genetics : Volume 112

Human Genetics : Volume 111

Human Genetics : Volume 110

Human Genetics : Volume 109

Human Genetics : Volume 108

Human Genetics : Volume 107

Human Genetics : Volume 106

Human Genetics : Volume 105

Human Genetics : Volume 104

Human Genetics : Volume 103

Human Genetics : Volume 102

Human Genetics : Volume 101

Human Genetics : Volume 100

Human Genetics : Volume 99

Use of autosomal loci for clustering individuals and populations of East Asian origin

Content Provider	Springer Nature Link
Author	Kim, Jong Jin Verdu, Paul Pakstis, Andrew J. Speed, William C. Kidd, Judith R. Kidd, Kenneth K.
Copyright Year	2005
Abstract	We studied the genetic relationships among East Asian populations based on allele frequency differences to clarify the relative similarities of East Asian populations with a specific focus on the relationships among the Koreans, the Japanese, and the Chinese populations known to be genetically similar. The goal is to find markers appropriate for differentiating among the specific populations. In this study, no prior data existed for Koreans and the markers were selected to differentiate Chinese and Japanese. We typed, using AB TaqMan assays, single-nucleotide polymorphisms (SNPs) at 43 highly selected mostly independent diallelic sites, on 386 individuals from eight East Asian populations (Han Chinese from San Francisco, Han Chinese from Taiwan, Hakka, Koreans, Japanese, Ami, Atayal, and Cambodians) and one Siberian population (Yakut). We inferred group membership of individuals using a model-based clustering method implemented by the STRUCTURE program and population clustering by using computer programs DISTANCE, NEIGHBOR, LSSEARCH, and DRAWTREE, respectively, calculating genetic distances among populations, calculating neighbor-joining and least-squares trees, and drawing the calculated trees. On average 52% of individuals in the three Chinese groups were assigned into one cluster, and, respectively, 78 and 69% of Koreans and Japanese into a different cluster. Koreans differentiated from the Chinese groups and clustered with the Japanese in the principal component analysis (PCA) and in the best least-squares tree. The majority of Koreans were difficult to distinguish from the Japanese. This study shows that a relatively few highly selected markers can, within limits, differentiate between closely related populations.
Starting Page	511
Ending Page	519
Page Count	9
File Format	PDF
ISSN	03406717
Journal	Human Genetics
Volume Number	117
Issue Number	6
e-ISSN	14321203
Language	English
Publisher	Springer-Verlag
Publisher Date	2005-07-19
Publisher Place	Berlin, Heidelberg
Access Restriction	One Nation One Subscription (ONOS)
Content Type	Text
Resource Type	Article
Subject	Genetics Genetics (clinical)

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in

Use of autosomal loci for clustering individuals and populations of East Asian origin

Analysis of Genetic Diversity of North Eurasian Populations Using Autosomal Microsatellite Loci

Comparative Phylogenetic Study of Native North Eurasian Populations Using a Panel of Autosomal Microsatellite Loci

The variation of 15 autosomal microsatellite DNA loci in five indigenous populations of South Siberia

Phylogenetic relationship of the populations within and around Japan using 105 short tandem repeat polymorphic loci

Allelic polymorphism of six microsatellite DNA Loci in populations of Sakha (Yakutia)

Genetic polymorphisms and population genetic analyses of 57 autosomal InDel loci in Hubei Tujia group

Polymorphism of the HLA class II loci in Siberian populations

Polymorphism of the tumor necrosis factor A gene in Melanesian and East-Asian populations

Use of autosomal loci for clustering individuals and populations of East Asian origin

Similar Documents

Use of autosomal loci for clustering individuals and populations of East Asian origin

Analysis of Genetic Diversity of North Eurasian Populations Using Autosomal Microsatellite Loci

Comparative Phylogenetic Study of Native North Eurasian Populations Using a Panel of Autosomal Microsatellite Loci

The variation of 15 autosomal microsatellite DNA loci in five indigenous populations of South Siberia

Phylogenetic relationship of the populations within and around Japan using 105 short tandem repeat polymorphic loci

Allelic polymorphism of six microsatellite DNA Loci in populations of Sakha (Yakutia)

Genetic polymorphisms and population genetic analyses of 57 autosomal InDel loci in Hubei Tujia group

Polymorphism of the HLA class II loci in Siberian populations

Polymorphism of the tumor necrosis factor A gene in Melanesian and East-Asian populations

Use of autosomal loci for clustering individuals and populations of East Asian origin