NDLI: Comprehensive Analysis of Dicer-Like, Argonaute, and RNA-dependent RNA Polymerase Gene Families in Grapevine (Vitis Vinifera)

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Comprehensive Analysis of Dicer-Like, Argonaute, and RNA-dependent RNA Polymerase Gene Families in Grapevine (Vitis Vinifera)

Content Provider	Springer Nature Link
Author	Zhao, Hualin Zhao, Kang Wang, Jie Chen, Xue Chen, Zhu Cai, Ronghao Xiang, Yan
Copyright Year	2014
Abstract	Regulation of gene expression is associated with RNA interference (RNAi) at the posttranscriptional level and chromatin modification in transcriptional silencing during plant development. Dicer-like (DCL) and Argonaute (AGO) proteins, along with RNA-dependent RNA polymerase (RDR), play integral roles in these processes. Many members of the DCL, AGO, and RDR gene families have been characterized in Arabidopsis, rice, maize, and tomato. However, little is known about these genes in grapevine. Here, we implemented a comprehensive bioinformatics analysis of the DCL, AGO, and RDR gene families in grapevine. In this study, a total of four VvDCL, thirteen VvAGO, and five VvRDR genes were identified in grapevine. These genes were categorized into four groups for each family based on phylogenetic analysis. Twenty-two genes were distributed across 11 chromosomes. We detected five segmental or tandem duplication events, which suggested their conserved functions during evolution. In each subfamily, protein motif composition was relatively conserved. The digital EST expression analyses provided a first glimpse of the expression patterns of DCL, AGO, and RDR gene in grapevine. It is worth mentioning that one gene, VvAGO10a, only expressed in the stem, which suggested that VvAGO10a may function in the regulation of siRNAs in the grapevine stem. Gene expression patterns during berry development and under different abiotic stresses were investigated utilizing microarray data. Thus, these detailed investigations provide a foundation for transcriptional silencing-associated gene families in grapevine for future functional genomics studies.
Starting Page	108
Ending Page	121
Page Count	14
File Format	PDF
ISSN	07217595
Journal	Journal of Plant Growth Regulation
Volume Number	34
Issue Number	1
e-ISSN	14358107
Language	English
Publisher	Springer US
Publisher Date	2014-09-03
Publisher Place	Boston
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Transcriptional silencing Dicer-like Argonaute RNA-dependent RNA Polymerase Gene expression analyses Plant Sciences Plant Anatomy/Development Plant Physiology Agriculture
Content Type	Text
Resource Type	Article
Subject	Plant Science Agronomy and Crop Science

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