NDLI: Genome-wide analysis of the CCCH zinc finger gene family in Medicago truncatula

Please wait, while we are loading the content...

Molecular cloning and characterization of two pathogenesis-related β-1,3-glucanase genes ScGluA1 and ScGluD1 from sugarcane infected by Sporisorium scitamineum

Overexpression of the glutamine synthetase gene modulates oxidative stress response in rice after exposure to cadmium stress

Transcriptome analysis of cytoplasmic male sterility and restoration in CMS-D8 cotton

Genome-wide analysis of the CCCH zinc finger gene family in Medicago truncatula

Agrobacterium tumefaciens-mediated in planta seed transformation strategy in sugarcane

Isolation and characterization of reverse transcriptase fragments of LTR retrotransposons from the genome of Chenopodium quinoa (Amaranthaceae)

Overexpression of AtWRKY28 and AtWRKY75 in Arabidopsis enhances resistance to oxalic acid and Sclerotinia sclerotiorum

Efficient auto-excision of a selectable marker gene from transgenic citrus by combining the Cre/loxP system and ipt selection

Copy number variation of transposable elements in Triticum–Aegilops genus suggests evolutionary and revolutionary dynamics following allopolyploidization

Inhibition of histone deacetylation alters Arabidopsis root growth in response to auxin via PIN1 degradation

Cefotaxime prevents microbial contamination and improves microspore embryogenesis in wheat and triticale

Defining reference genes for qPCR normalization to study biotic and abiotic stress responses in Vigna mungo

Erratum to: Bioprocessing of plant-derived virus-like particles of Norwalk virus capsid protein under current Good Manufacture Practice regulations

Plant Cell Reports : Volume 32, Issue 9, September 2013

Plant Cell Reports : Volume 32, Issue 8, August 2013

Plant Cell Reports : Volume 32, Issue 7, July 2013

Plant Cell Reports : Volume 32, Issue 6, June 2013

Plant Cell Reports : Volume 32, Issue 5, May 2013

Plant Cell Reports : Volume 32, Issue 4, April 2013

Plant Cell Reports : Volume 32, Issue 3, March 2013

Plant Cell Reports : Volume 32, Issue 2, February 2013

Plant Cell Reports : Volume 32, Issue 1, January 2013

Plant Cell Reports : Volume 31

Plant Cell Reports : Volume 30

Plant Cell Reports : Volume 29

Plant Cell Reports : Volume 28

Plant Cell Reports : Volume 27

Plant Cell Reports : Volume 26

Plant Cell Reports : Volume 25

Plant Cell Reports : Volume 24

Plant Cell Reports : Volume 23

Plant Cell Reports : Volume 22

Plant Cell Reports : Volume 21

Plant Cell Reports : Volume 20

Plant Cell Reports : Volume 19

Plant Cell Reports : Volume 18

Plant Cell Reports : Volume 17

Plant Cell Reports : Volume 16

Genome-wide analysis of the CCCH zinc finger gene family in Medicago truncatula

Content Provider	Springer Nature Link
Author	Zhang, Cuiqin Zhang, Hongmei Zhao, Yang Jiang, Haiyang Zhu, Suwen Cheng, Beijiu Xiang, Yan
Copyright Year	2013
Abstract	In this study, we identified 34 CCCH Znf genes in Medicago truncatula and the results of semi-quantitative RT-PCR revealed that the expression patterns of subfamily VI members were diverse. CCCH-type zinc finger (Znf) proteins are specific transcriptional factors with a typical motif consisting of three cysteine residues and one histidine residue. Increasing evidences have revealed that CCCH Znf proteins participated in the regulation of plant growth, developmental processes and environmental responses. Survey and characterization of CCCH Znf genes in leguminous species would facilitate a better understanding of the evolutionary processes and functions of this gene family. In this study, we performed a comprehensive analysis of CCCH Znf genes in M. truncatula by describing the phylogenetic relationships, chromosomal location and gene structure of each family member. A total of 34 CCCH Znf genes were identified in the latest M. truncatula genome sequence. The 34 predicted members were clustered into nine subfamilies based on their phylogenetic analysis and structure features. In addition, the 34 Medicago CCCH Znf genes were found to be unevenly distributed on eight chromosomes. Furthermore, the expression profiles of subfamily VI were investigated under different stress conditions (PEG-6000, NaCl and ABA) by using semi-quantitative RT-PCR. The data showed that these genes displayed different expression levels in response to various stress conditions. The results presented in this study provide basic information about Medicago CCCH Znf genes and form a fundamental clue for cloning genes with specific functions in further studies and applications.
Starting Page	1543
Ending Page	1555
Page Count	13
File Format	PDF
ISSN	07217714
Journal	Plant Cell Reports
Volume Number	32
Issue Number	10
e-ISSN	1432203X
Language	English
Publisher	Springer Berlin Heidelberg
Publisher Date	2013-06-09
Publisher Place	Berlin, Heidelberg
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	CCCH zinc finger Phylogenetic analysis Gene structure Expression profile Medicago truncatula Cell Biology Plant Sciences Biotechnology Plant Biochemistry
Content Type	Text
Resource Type	Article
Subject	Plant Science Medicine Agronomy and Crop Science

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in

Genome-wide analysis of the CCCH zinc finger gene family in Medicago truncatula.

Genome-wide analysis and expression patterns of the NAC transcription factor family in Medicago truncatula

Defensin gene family in Medicago truncatula: structure, expression and induction by signal molecules

Comprehensive analysis of CCCH-type zinc finger gene family in citrus (Clementine mandarin) by genome-wide characterization

Genome-wide analysis and identification of stress-responsive genes of the CCCH zinc finger family in Solanum lycopersicum

Genome-Wide Survey and Expression Profiling of CCCH- Zinc Finger Family Reveals a Functional Module in Macrophage Activation (2008)

Genome-wide analysis of the CCCH zinc finger family in longan: Characteristic identification and expression profiles in Dimocarpus longan Lour

Genome-Wide Analysis of Glycoside Hydrolase Family 35 Genes and Their Potential Roles in Cell Wall Development in Medicago truncatula

Genome-wide identification and expression analysis of the GRAS family proteins in Medicago truncatula

Genome-wide analysis of the CCCH zinc finger gene family in Medicago truncatula

Similar Documents

Genome-wide analysis of the CCCH zinc finger gene family in Medicago truncatula.

Genome-wide analysis and expression patterns of the NAC transcription factor family in Medicago truncatula

Defensin gene family in Medicago truncatula: structure, expression and induction by signal molecules

Comprehensive analysis of CCCH-type zinc finger gene family in citrus (Clementine mandarin) by genome-wide characterization

Genome-wide analysis and identification of stress-responsive genes of the CCCH zinc finger family in Solanum lycopersicum

Genome-Wide Survey and Expression Profiling of CCCH- Zinc Finger Family Reveals a Functional Module in Macrophage Activation (2008)

Genome-wide analysis of the CCCH zinc finger family in longan: Characteristic identification and expression profiles in Dimocarpus longan Lour

Genome-Wide Analysis of Glycoside Hydrolase Family 35 Genes and Their Potential Roles in Cell Wall Development in Medicago truncatula

Genome-wide identification and expression analysis of the GRAS family proteins in Medicago truncatula

Genome-wide analysis of the CCCH zinc finger gene family in Medicago truncatula