NDLI: Biogeography of Planktonic and Benthic Archaeal Communities in a Subtropical Eutrophic Estuary of China

Please wait, while we are loading the content...

Lipid Biomarker and Isotopic Study of Community Distribution and Biomarker Preservation in a Laminated Microbial Mat from Shark Bay, Western Australia

Temporal Dynamics of Active Prokaryotic Nitrifiers and Archaeal Communities from River to Sea

Microbial Consortium Associated with the Antarctic Marine Ciliate Euplotes focardii: An Investigation from Genomic Sequences

The Microbiome of Field-Caught and Laboratory-Adapted Australian Tephritid Fruit Fly Species with Different Host Plant Use and Specialisation

Relations of Wolbachia Infection with Phylogeography of Philaenus spumarius (Hemiptera: Aphrophoridae) Populations Within and Beyond the Carpathian Contact Zone

Seasonal Variation of Honeybee Pathogens and its Association with Pollen Diversity in Uruguay

Community Structure of Skin Microbiome of Gulf Killifish, Fundulus grandis, Is Driven by Seasonality and Not Exposure to Oiled Sediments in a Louisiana Salt Marsh

The Gut Microbiota of Workers of the Litter-Feeding Termite Syntermes wheeleri (Termitidae: Syntermitinae): Archaeal, Bacterial, and Fungal Communities

Salivary Microbiota Associated with Immunoglobulin A Nephropathy

Growth and Survival of Mesorhizobium loti Inside Acanthamoeba Enhanced Its Ability to Develop More Nodules on Lotus corniculatus

Erratum to: Viable but not Culturable Forms of Legionella pneumophila Generated After Heat Shock Treatment are Infectious for Macrophage-like and Alveolar Epithelial cells after Resuscitation on Acanthamoeba polyphaga

Microbial Ecology : Volume 70, Issue 1, July 2015

Microbial Ecology : Volume 69

Microbial Ecology : Volume 68

Microbial Ecology : Volume 67

Microbial Ecology : Volume 66

Microbial Ecology : Volume 65

Microbial Ecology : Volume 64

Microbial Ecology : Volume 63

Microbial Ecology : Volume 62

Microbial Ecology : Volume 61

Microbial Ecology : Volume 60

Microbial Ecology : Volume 59

Microbial Ecology : Volume 58

Microbial Ecology : Volume 57

Microbial Ecology : Volume 56

Microbial Ecology : Volume 55

Microbial Ecology : Volume 54

Microbial Ecology : Volume 53

Microbial Ecology : Volume 52

Microbial Ecology : Volume 51

Microbial Ecology : Volume 50

Microbial Ecology : Volume 49

Microbial Ecology : Volume 48

Microbial Ecology : Volume 47

Microbial Ecology : Volume 46

Microbial Ecology : Volume 45

Microbial Ecology : Volume 44

Microbial Ecology : Volume 43

Microbial Ecology : Volume 42

Microbial Ecology : Volume 41

Microbial Ecology : Volume 40

Microbial Ecology : Volume 39

Microbial Ecology : Volume 38

Microbial Ecology : Volume 37

Microbial Ecology : Volume 36

Microbial Ecology : Volume 35

Microbial Ecology : Volume 34

Microbial Ecology : Volume 33

Biogeography of Planktonic and Benthic Archaeal Communities in a Subtropical Eutrophic Estuary of China

Content Provider	Springer Nature Link
Author	Hu, Anyi Hou, Liyuan Yu, Chang Ping
Copyright Year	2015
Abstract	Mounting evidence suggests that Archaea are widespread and abundant in aquatic and terrestrial habitats and play fundamental roles in global biogeochemical cycles, yet the pattern and its ecological drivers of biogeographic distribution of archaeal community in estuarine ecosystem are still not well understood. Here, we investigated planktonic and benthic archaeal communities in the human-impacted Jiulong River estuary (JRE), southern China by using real-time PCR (RT-PCR) and Illumina 16S ribosomal RNA (rRNA) amplicon sequencing. RT-PCR analysis indicated that Archaea accounted for an average of 0.79 and 5.31 % of prokaryotic biomass in water and sediment samples of the JRE, respectively. The diversity of planktonic archaeal community decreased gradually from the river runoff to seawater, whereas that of benthic community did not show the similar pattern. The results of taxonomic assignments indicated that Thaumarchaeota (Nitrosopumilus and Cenarchaeum), Methanocorpusculum, and Methanospirillum were significantly more abundant in planktonic than benthic communities, whereas the relative abundances of Miscellaneous Crenarchaeotic Group, Marine Benthic Group-B/-D, anaerobic methane-oxidizing Archaea -1/-2D, and South Africa Gold Mine Euryarchaeotic Group 1 were higher in sediments than in surface waters. Moreover, planktonic archaeal community composition varied significantly at broad and finer-scale taxonomic levels along the salinity gradient. Multivariate statistical analyses revealed that salinity is the main factor structuring the JRE planktonic but not benthic archaeal community at both total community and population level. SourceTrakcer analysis indicated that river might be a major source of archaea in the freshwater zone of the JRE. Overall, this study advances our understanding of the biogeographic patterns and its ecological drivers of estuarine archaeal communities.
Starting Page	322
Ending Page	335
Page Count	14
File Format	PDF
ISSN	00953628
Journal	Microbial Ecology
Volume Number	70
Issue Number	2
e-ISSN	1432184X
Language	English
Publisher	Springer US
Publisher Date	2015-03-25
Publisher Place	New York
Access Restriction	Subscribed
Subject Keyword	Archaea Real-time PCR Illumina 16S rRNA amplicon sequencing Jiulong river estuary Biogeography Ecological driver Microbiology Ecology Microbial Ecology Geoecology/Natural Processes Nature Conservation Water Quality/Water Pollution
Content Type	Text
Resource Type	Article
Subject	Soil Science Ecology Ecology, Evolution, Behavior and Systematics

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in

Stratified active archaeal communities in the sediments of Jiulong River Estuary, China

Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils

Archaeal community in a human-disturbed watershed in southeast China: diversity, distribution, and responses to environmental changes

Spatiotemporal Analysis of Bacterial Diversity in Sediments of Sundarbans Using Parallel 16S rRNA Gene Tag Sequencing

Species identification and profiling of complex microbial communities using shotgun illumina sequencing of 16s rrna amplicon sequences

Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences

Illumina Sequencing of 16S rRNA Tag Revealed Spatial Variations of Bacterial Communities in a Mangrove Wetland

Evaluation of 16S rRNA Gene Primer Pairs for Monitoring Microbial Community Structures Showed High Reproducibility within and Low Comparability between Datasets Generated with Multiple Archaeal and Bacterial Primer Pairs

Water Column Microbial Communities Vary along Salinity Gradients in the Florida Coastal Everglades Wetlands

Biogeography of Planktonic and Benthic Archaeal Communities in a Subtropical Eutrophic Estuary of China

Similar Documents

Stratified active archaeal communities in the sediments of Jiulong River Estuary, China

Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils

Archaeal community in a human-disturbed watershed in southeast China: diversity, distribution, and responses to environmental changes

Spatiotemporal Analysis of Bacterial Diversity in Sediments of Sundarbans Using Parallel 16S rRNA Gene Tag Sequencing

Species identification and profiling of complex microbial communities using shotgun illumina sequencing of 16s rrna amplicon sequences

Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences

Illumina Sequencing of 16S rRNA Tag Revealed Spatial Variations of Bacterial Communities in a Mangrove Wetland

Evaluation of 16S rRNA Gene Primer Pairs for Monitoring Microbial Community Structures Showed High Reproducibility within and Low Comparability between Datasets Generated with Multiple Archaeal and Bacterial Primer Pairs

Water Column Microbial Communities Vary along Salinity Gradients in the Florida Coastal Everglades Wetlands

Biogeography of Planktonic and Benthic Archaeal Communities in a Subtropical Eutrophic Estuary of China