NDLI: Determining the sample size for co-dominant molecular marker-assisted linkage detection for a monogenic qualitative trait by controlling the type-I and type-II errors in a segregating F2 population

Please wait, while we are loading the content...

Construction of a linkage map and QTL analysis of horticultural traits for watermelon [Citrullus lanatus (THUNB.) MATSUM & NAKAI] using RAPD, RFLP and ISSR markers

Isolation and characterization of a full-length resistance gene homolog from soybean

Identification of five new blast resistance genes in the highly blast-resistant rice variety IR64 using a QTL mapping strategy

Multiple origins of allopolyploid Aegilops triuncialis

Sequence variability of a dehydrin gene within Helianthus annuus

A set of simple-sequence repeat (SSR) markers covering the Prunus genome

Comparison between Poncirus and Citrus genetic linkage maps

Pollen morphology and in vitro germination characteristics of nodulating and nonnodulating soybean (Glycine max L.) genotypes

Determining the sample size for co-dominant molecular marker-assisted linkage detection for a monogenic qualitative trait by controlling the type-I and type-II errors in a segregating F2 population

Genetic and morphological characterization of the barley uniculm2 (cul2) mutant

Microsatellite mapping of the powdery mildew resistance gene Pm5e in common wheat (Triticum aestivum L.)

Genetic mapping and analysis of quantitative trait loci affecting fiber and lignin content in maize

High-resolution mapping of the leaf rust disease resistance gene Lr1 in wheat and characterization of BAC clones from the Lr1 locus

Cytological and breeding behavior of pentaploids derived from 3x × 4x crosses in potato

Linkage of the A locus for the presence of anthocyanin and fs10.1, a major fruit-shape QTL in pepper

Maize introduction into Europe: the history reviewed in the light of molecular data

Inheritance of self-compatibility in almond: breeding strategies to assure self-compatibility in the progeny

Development and transferability of apricot and grape EST microsatellite markers across taxa

An EREBP/AP2-type protein in Triticum aestivum was a DRE-binding transcription factor induced by cold, dehydration and ABA stress

Old-growth red spruce forests as reservoirs of genetic diversity and reproductive fitness

Structural organization of the group-1 chromosomes of two bread wheat sister lines

Population genetic structure of Pyrenophora teresDrechs. the causal agent of net blotch in Sardinian landraces of barley (Hordeum vulgare L.)

Theoretical and Applied Genetics : Volume 106, Issue 4, February 2003

Theoretical and Applied Genetics : Volume 106, Issue 3, February 2003

Theoretical and Applied Genetics : Volume 106, Issue 2, January 2003

Theoretical and Applied Genetics : Volume 106, Issue 1, December 2002

Theoretical and Applied Genetics : Volume 105

Theoretical and Applied Genetics : Volume 104

Theoretical and Applied Genetics : Volume 103

Theoretical and Applied Genetics : Volume 102

Theoretical and Applied Genetics : Volume 101

Theoretical and Applied Genetics : Volume 100

Theoretical and Applied Genetics : Volume 99

Theoretical and Applied Genetics : Volume 98

Theoretical and Applied Genetics : Volume 97

Theoretical and Applied Genetics : Volume 96

Theoretical and Applied Genetics : Volume 95

Theoretical and Applied Genetics : Volume 94

Determining the sample size for co-dominant molecular marker-assisted linkage detection for a monogenic qualitative trait by controlling the type-I and type-II errors in a segregating F2 population

Content Provider	Springer Nature Link
Author	Hühn, M. Piepho, H. P.
Copyright Year	2003
Abstract	Tests for linkage are usually performed using the lod score method. A critical question in linkage analyses is the choice of sample size. The appropriate sample size depends on the desired type-I error and power of the test. This paper investigates the exact type-I error and power of the lod score method in a segregating F2 population with co-dominant markers and a qualitative monogenic dominant-recessive trait. For illustration, a disease-resistance trait is considered, where the susceptible allele is recessive. A procedure is suggested for finding the appropriate sample size. It is shown that recessive plants have about twice the information content of dominant plants, so the former should be preferred for linkage detection. In some cases the exact α-values for a given nominal α may be rather small due to the discrete nature of the sampling distribution in small samples. We show that a gain in power is possible by using exact methods.
Starting Page	840
Ending Page	845
Page Count	6
File Format	PDF
ISSN	00405752
Journal	Theoretical and Applied Genetics
Volume Number	106
Issue Number	5
e-ISSN	14322242
Language	English
Publisher	Springer-VerlagSpringer-Verlag
Publisher Date	2002-12-19
Publisher Place	Berlin/Heidelberg
Access Restriction	One Nation One Subscription (ONOS)
Content Type	Text
Resource Type	Article
Subject	Genetics Medicine Biotechnology Agronomy and Crop Science

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in

Ordering dominant markers in F2 populations

Microsatellite Linkage Map Based on F2 Population from Bulgarian Grapevine Cultivar Storgozia

Quantitative trait loci for panicle size, heading date and plant height co-segregating in trait-performance derived near-isogenic lines of rice (Oryza sativa)

Plant selection in F2 segregating populations of papaya from commercial hybrids

Testing for linkage disequilibrium in the New Zealand radiata pine breeding population

Marker-assisted selection in segregating generations of self-fertilizing crops

Quantitative trait loci for lodging resistance in a segregating wheat×spelt population

Identification of AFLPs co-segregating with the creeping-rootedness trait in lucerne (Medicago sativa L. complex)

Molecular Tagging and Selection for Sugar Type in Carrot Roots Using Co-dominant, PCR-based Markers

Determining the sample size for co-dominant molecular marker-assisted linkage detection for a monogenic qualitative trait by controlling the type-I and type-II errors in a segregating F2 population

Similar Documents

Ordering dominant markers in F2 populations

Microsatellite Linkage Map Based on F2 Population from Bulgarian Grapevine Cultivar Storgozia

Quantitative trait loci for panicle size, heading date and plant height co-segregating in trait-performance derived near-isogenic lines of rice (Oryza sativa)

Plant selection in F2 segregating populations of papaya from commercial hybrids

Testing for linkage disequilibrium in the New Zealand radiata pine breeding population

Marker-assisted selection in segregating generations of self-fertilizing crops

Quantitative trait loci for lodging resistance in a segregating wheat×spelt population

Identification of AFLPs co-segregating with the creeping-rootedness trait in lucerne (Medicago sativa L. complex)

Molecular Tagging and Selection for Sugar Type in Carrot Roots Using Co-dominant, PCR-based Markers

Determining the sample size for co-dominant molecular marker-assisted linkage detection for a monogenic qualitative trait by controlling the type-I and type-II errors in a segregating F2 population