NDLI: Using half-normal probability plot and regression analysis to differentiate complex traits: differentiating disease response of multigenic resistance and susceptibility in tomatoes to multiple pathogen isolates

Please wait, while we are loading the content...

Using half-normal probability plot and regression analysis to differentiate complex traits: differentiating disease response of multigenic resistance and susceptibility in tomatoes to multiple pathogen isolates

RECORD: a novel method for ordering loci on a genetic linkage map

High-resolution mapping and mutation analysis separate the rust resistance genes Sr31, Lr26 and Yr9 on the short arm of rye chromosome 1

Molecular mapping of a quantitative trait locus for aluminum tolerance in wheat cultivar Atlas 66

Evidence of the domestication history of flax (Linum usitatissimum L.) from genetic diversity of the sad2 locus

Entity evidence for differentiation between Tia and Tib types of soybean Kunitz trypsin inhibitor: detection of a novel transitional variant type between Tia and Tib in wild soybean (Glycine soja Sieb. & Zucc.)

Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments

QTLs for low nitrogen tolerance at seedling stage identified using a recombinant inbred line population derived from an elite rice hybrid

High-temperature adult-plant (HTAP) stripe rust resistance gene Yr36 from Triticum turgidum ssp. dicoccoides is closely linked to the grain protein content locus Gpc-B1

Grain yield responses to moisture regimes in a rice population: association among traits and genetic markers

Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts

Extension and use of a physical map of the Thinopyrum-derived Lr19 translocation

Development of a genomic library of near isogenic lines (NILs) in melon (Cucumis melo L.) from the exotic accession PI161375

Cross-species amplification of microsatellite loci within the dioecious, polyploid genus Actinidia (Actinidiaceae)

Isolation, characterization and mapping of simple sequence repeat markers in zoysiagrass (Zoysia spp.)

Molecular cloning and genetic mapping of perennial ryegrass casein protein kinase 2 α-subunit genes

Allele-specific CAPS markers based on point mutations in resistance alleles at the pvr1 locus encoding eIF4E in Capsicum

SMOOTH: a statistical method for successful removal of genotyping errors from high-density genetic linkage data

Quantitative trait loci for partial resistance to crown rust, Puccinia coronata, in cultivated oat, Avena sativa L.

Theoretical and Applied Genetics : Volume 111

Theoretical and Applied Genetics : Volume 110

Theoretical and Applied Genetics : Volume 109

Theoretical and Applied Genetics : Volume 108

Theoretical and Applied Genetics : Volume 107

Theoretical and Applied Genetics : Volume 106

Theoretical and Applied Genetics : Volume 105

Theoretical and Applied Genetics : Volume 104

Theoretical and Applied Genetics : Volume 103

Theoretical and Applied Genetics : Volume 102

Theoretical and Applied Genetics : Volume 101

Theoretical and Applied Genetics : Volume 100

Theoretical and Applied Genetics : Volume 99

Theoretical and Applied Genetics : Volume 98

Theoretical and Applied Genetics : Volume 97

Theoretical and Applied Genetics : Volume 96

Theoretical and Applied Genetics : Volume 95

Theoretical and Applied Genetics : Volume 94

Using half-normal probability plot and regression analysis to differentiate complex traits: differentiating disease response of multigenic resistance and susceptibility in tomatoes to multiple pathogen isolates

Content Provider	Springer Nature Link
Author	Kim, Min Jea Federer, Walter Mutschler, Martha A.
Copyright Year	2005
Abstract	The need for a new analytical approach was encountered in the course of characterizing newly developed tomato lines resistant to late blight. Late blight resistant tomato lines were created in independent breeding programs using the accession Solanum pimpinellifolium L. (formerly Lycopersicon pimpinellifolium (L.) Miller) L3708 as the source of the resistance. However, initial field observation suggested that the late blight resistance in the lines produced by two independent breeding programs differed. Possible causes included a partial transfer of the late blight resistance derived from S. pimpinellifolium L3708 or the possibility of race specificity of this resistance. A crucial issue was determining the most appropriate and robust analytical method to use with data from laboratory analyses of the responses of nine tomato lines against five P. infestans isolates. Prior analysis by standard ANOVA revealed significant differences across tomato lines but could not determine whether the disease responses in the CLN-R lines were different from those of the heterozygous F1 hybrids, created by crossing susceptible tomatoes with the fixed CU-R lines. A different analytical method was needed. Therefore, sporangia numbers/leaflet and diseased area data were analyzed using a half-normal probability plot and regression analysis. The results of this analysis show its utility for genetic or pathology studies. Considering only populations of the uniform tomato lines, this method confirms the results obtained by using a standard ANOVA, but provides a clearer demonstration of the distributions of the individuals within the populations and how this distribution impacts variance and the difference among the populations. This method also allows a joint analysis of the uniform lines with an additional population that is less uniform, because it is segregating. Such an analysis would be invalid using a standard ANOVA. The results of this joint analysis determined that the additional population was divergent from the fixed CU-R lines, and, against some isolates, against the CLN-R lines as well. Half-normal probability plot analysis method would be applicable more broadly beyond analysis of disease resistance data. It could be useful for data from populations that are not normally distributed, for traits which are affected by epistatic gene action, and could be useful for selection of extremes.
Starting Page	21
Ending Page	29
Page Count	9
File Format	PDF
ISSN	00405752
Journal	Theoretical and Applied Genetics
Volume Number	112
Issue Number	1
e-ISSN	14322242
Language	English
Publisher	Springer-Verlag
Publisher Date	2005-10-20
Publisher Place	Berlin/Heidelberg
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Resistance Late blight Phytophthora infestans Tomato Lycopersicon esculentum Half-normal probability analysis
Content Type	Text
Resource Type	Article
Subject	Genetics Medicine Biotechnology Agronomy and Crop Science

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in

Mating type, mefenoxam sensitivity, and pathotype diversity in Phytophthora infestans isolates from tomato in Brazil

Inheritance of resistance to Phytophthora infestans (Peronosporales, Pythiaceae) in a new source of resistance in tomato (Solanum sp. (formerly Lycopersicon sp.), Solanales, Solanaceae)

Mapping Quantitative Trait Loci (QTL) for Resistance to Late Blight in Tomato

[beta]-Aminobutyric Acid Induces the Accumulation of Pathogenesis-Related Proteins in Tomato (Lycopersicon esculentum L.) Plants and Resistance to Late Blight Infection Caused by Phytophthora infestans.

STUDIES ON LATE BLIGHT OF TOMATO (LYCOPERSICON ESCULENTUM MILL.) CAUSED BY PHYTOPHTHORA INFESTANS (MONT.) DE BARY

Phytophthora infestans: An Overview of Methods and Attempts to Combat Late Blight

Leaf Extracts from Resistant Wild Tomato Can Be Used to Control Late Blight (Phytophthora infestans) in the Cultivated Tomato

Screening tomato germplasm for resistance to late blight

Molecular Markers Associated with Ph-3 Gene Conferring Late Blight Resistance in Tomato

Using half-normal probability plot and regression analysis to differentiate complex traits: differentiating disease response of multigenic resistance and susceptibility in tomatoes to multiple pathogen isolates

Similar Documents

Mating type, mefenoxam sensitivity, and pathotype diversity in Phytophthora infestans isolates from tomato in Brazil

Inheritance of resistance to Phytophthora infestans (Peronosporales, Pythiaceae) in a new source of resistance in tomato (Solanum sp. (formerly Lycopersicon sp.), Solanales, Solanaceae)

Mapping Quantitative Trait Loci (QTL) for Resistance to Late Blight in Tomato

[beta]-Aminobutyric Acid Induces the Accumulation of Pathogenesis-Related Proteins in Tomato (Lycopersicon esculentum L.) Plants and Resistance to Late Blight Infection Caused by Phytophthora infestans.

STUDIES ON LATE BLIGHT OF TOMATO (LYCOPERSICON ESCULENTUM MILL.) CAUSED BY PHYTOPHTHORA INFESTANS (MONT.) DE BARY

Phytophthora infestans: An Overview of Methods and Attempts to Combat Late Blight

Leaf Extracts from Resistant Wild Tomato Can Be Used to Control Late Blight (Phytophthora infestans) in the Cultivated Tomato

Screening tomato germplasm for resistance to late blight

Molecular Markers Associated with Ph-3 Gene Conferring Late Blight Resistance in Tomato

Using half-normal probability plot and regression analysis to differentiate complex traits: differentiating disease response of multigenic resistance and susceptibility in tomatoes to multiple pathogen isolates