NDLI: A Branch and Bound Algorithm for the Protein Folding Problem in the HP Lattice Model

Content Provider	Semantic Scholar
Author	Chen, Mao Huang, Wen-Qi
Copyright Year	2005
Abstract	A branch and bound algorithm is proposed for the two-dimensional protein folding problem in the HP lattice model. In this algorithm, the benefit of each possible location of hydrophobic monomers is evaluated and only promising nodes are kept for further branching at each level. The proposed algorithm is compared with other well-known methods for 10 benchmark sequences with lengths ranging from 20 to 100 monomers. The results indicate that our method is a very efficient and promising tool for the protein folding problem.
Starting Page	225
Ending Page	230
Page Count	6
File Format	PDF HTM / HTML
DOI	10.1016/S1672-0229(05)03031-7
Alternate Webpage(s)	http://www.brown.edu/Research/Istrail_Lab/papers/2005/bran-06.pdf
Alternate Webpage(s)	https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/cf/63/main.PMC5172541.pdf
Alternate Webpage(s)	http://cs.brown.edu/~sorin/lab/_proFolding/papers/2005/bran-06.pdf
PubMed reference number	16689690
Alternate Webpage(s)	https://doi.org/10.1016/S1672-0229%2805%2903031-7
Journal	Medline
Volume Number	3
Journal	Genomics, proteomics & bioinformatics
Language	English
Access Restriction	Open
Content Type	Text
Resource Type	Article

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A Branch and Bound Algorithm for the Protein Folding Problem in the HP Lattice Model