NDLI: EBSeq: An R package for differential expression analysis using RNA-seq data

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EBSeq: An R package for differential expression analysis using RNA-seq data

Content Provider	Semantic Scholar
Author	Leng, Ning Dawson, John Kendziorski, Christina
Copyright Year	2013
Abstract	4 Quick Start 6 4.1 Gene level DE analysis (two conditions) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6 4.1.1 Required input . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6 4.1.2 Library size factor . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6 4.1.3 Running EBSeq on gene expression estimates . . . . . . . . . . . . . . . . . . . . . . . 6 4.2 Isoform level DE analysis (two conditions) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7 4.2.1 Required inputs . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7 4.2.2 Library size factor . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8 4.2.3 The Ig vector . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8 4.2.4 Running EBSeq on isoform expression estimates . . . . . . . . . . . . . . . . . . . . . 8 4.3 Gene level DE analysis (more than two conditions) . . . . . . . . . . . . . . . . . . . . . . . . 9 4.4 Isoform level DE analysis (more than two conditions) . . . . . . . . . . . . . . . . . . . . . . . 11
File Format	PDF HTM / HTML
Alternate Webpage(s)	http://www.bioconductor.org/packages/2.13/bioc/vignettes/EBSeq/inst/doc/EBSeq_Vignette.pdf
Alternate Webpage(s)	http://www.bioconductor.org/packages/release/bioc/vignettes/EBSeq/inst/doc/EBSeq_Vignette.pdf
Alternate Webpage(s)	https://www.bioconductor.org/packages/release/bioc/vignettes/EBSeq/inst/doc/EBSeq_Vignette.pdf
Alternate Webpage(s)	http://www.bioconductor.org/packages/devel/bioc/vignettes/EBSeq/inst/doc/EBSeq_Vignette.pdf
Language	English
Access Restriction	Open
Content Type	Text
Resource Type	Article

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