NDLI: Transcriptome wide identification and characterization of Starch Synthase enzyme in finger millet

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Transcriptome wide identification and characterization of Starch Synthase enzyme in finger millet

Content Provider	Semantic Scholar
Author	Tyagi, Rajhans Tiwari, Apoorv Gupta, Alok Kumar Gupta, Sanjay
Copyright Year	2018
Abstract	Finger millet is a calcium-rich cereal crop of the grass family. The transcriptome data for finger millet is available at NCBI. It is of interest to annotate and characterize starch synthase enzyme from finger millet transcriptome data. Starch synthase plays an important role in the elongation of glucan chains during the formation of starch. The starch synthase enzyme is characterized using three domains (Glyco_transf_5, Glycos_transf_1 and Glyco_trans_1_4). Binding sites for GLC (alpha-d-glucose), PLP (Pyridoxal-5'- phosphate), AMP (Adenosine monophosphate) and GOL (Glycerol) are found. The phylogenetic analysis showed that the finger millet starch synthase is similar to the granule-bound starch synthase of Oryza sativa and Concrete amaricanus. We report the sequence (GenBank accession number KY648917) and the structural model of finger millet starch synthase (PMDB ID: PM0081600).
Starting Page	393
Ending Page	397
Page Count	5
File Format	PDF HTM / HTML
PubMed reference number	30262977v1
Alternate Webpage(s)	https://doi.org/10.6026/97320630014393
DOI	10.6026/97320630014393
Journal	Bioinformation
Volume Number	14
Language	English
Access Restriction	Open
Subject Keyword	3-Phosphoshikimate 1-carboxyvinyltransferase Accession Number (identifier) Adenosine Monophosphate Amyloplasts Anabolism Avian crop Binding Sites Body tissue Calcium Carbamoyl-Phosphate Synthase I Deficiency Disease Cereals Chloroplasts GenBank Glucose Glycerin Hexoses National Center for Biotechnology Information Oryza (plant) Plant Roots Plant seeds Plastids Poaceae Prostaglandin-Endoperoxide Synthase Starch (Bacterial Glycogen) Synthase Transcriptome starch biosynthetic process type I interferon receptor
Content Type	Text
Resource Type	Article

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