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Exact Tandem Repeats using Suffix Array and Longest Common Prefix
| Content Provider | Semantic Scholar |
|---|---|
| Author | Bhukya, Raju |
| Copyright Year | 2018 |
| Abstract | Tandem Repeats (TRs) are the repeats which occur in a chromosome, while a pattern of 1 or more nucleotides (A, C, G, T) is repeated more than one time and the repetitions are continuous. Repeating patterns also referred to as motifs or base patterns, can be of various lengths. There is a complete of 25 linkage groups or chromosomes in the Zebrafish genome. The proposed algorithm reported exact tandem repeats with a motif length of at least three 3 with the help of an algorithm that uses a suffix array and longest common prefix. An overall of 119,909 repeats, with a base pattern of at least 3 nucleotides were detected. A massive number of repeats with a base period of 18, 24, 27 30 had been detected. The algorithm produces better results as compared to the existing results in terms of a number of repeats. |
| Starting Page | 3686 |
| Ending Page | 3691 |
| Page Count | 6 |
| File Format | PDF HTM / HTML |
| DOI | 10.29042/2018-3686-3691 |
| Volume Number | 8 |
| Alternate Webpage(s) | http://helix.dnares.in/wp-content/uploads/2018/09/3686-3691.pdf |
| Alternate Webpage(s) | https://doi.org/10.29042/2018-3686-3691 |
| Language | English |
| Access Restriction | Open |
| Content Type | Text |
| Resource Type | Article |
