NDLI: The AB05 NIAB Tools Workbench for Building Automatic Biopathway Maps for Agricultural Organisms

Please wait, while we are loading the content...

The AB05 NIAB Tools Workbench for Building Automatic Biopathway Maps for Agricultural Organisms

Content Provider	Semantic Scholar
Author	Cho, Mi Kyung Yoon, Kyung Oh Park, Hyun Seok
Copyright Year	2007
Abstract	Summary For the past several years, we have built various tools for automatic construction of biopathways to help biological experts, especially in the field of agriculture. We integrated several systems for constructing web applications for analyzing biological pathway information for agricultural species, constructing optimized pathway maps. In addition to building web applications for agricultural pathway information, we developed several stand-alone software tools, which are publicly downloadable under proper license agreements. Availability: The website for the system is http://biopath. niab.go.kr/index.jsp. Technical manuals for the project are available. Keywords: visualization, pathway map, interaction, bioinformatics The AB05 Modules We have been building a software system-the NIAB AB05 Tools Workbench-for analyzing and visualizing biological pathways and networks for efficient exploitation. It is based on a comprehensive, extensible data model that can be used to model biological pathways and networks. The system aims to be a portal site for agricultural genome and pathway information sites, combining genome and pathway informatics modules on the web. The system has been uniformly written in Java for portability, composed of several web application modules and stand-alone modules, including ABIS, MPV, PathFinder, BioPathCAD, BioNetView, Biopathway XML Conversion Parser, PDB3D, BioTextMiner, WeSAT, Interfacer, and WASPIV. These modules can be
Starting Page	200
Ending Page	202
Page Count	3
File Format	PDF HTM / HTML
Volume Number	5
Alternate Webpage(s)	http://ocean.kisti.re.kr/downfile/volume/kgo/OJCHBH/2007/v5n4/OJCHBH_2007_v5n4_200.pdf
Language	English
Access Restriction	Open
Content Type	Text
Resource Type	Article

Central Library (ISO-9001:2015 Certified)
Indian Institute of Technology Kharagpur
Kharagpur, West Bengal, India | PIN - 721302

See location in the Map
03222 282435
Mail: support@ndl.gov.in

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in