NDLI: Pedobacter daejeonensis sp. nov. and Pedobacter trunci sp. nov., isolated from an ancient tree trunk, and emended description of the genus Pedobacter.

Please wait, while we are loading the content...

Pedobacter daejeonensis sp. nov. and Pedobacter trunci sp. nov., isolated from an ancient tree trunk, and emended description of the genus Pedobacter.

Content Provider	Semantic Scholar
Author	Du, Juan Singh, H. B. Ngo, Hien T. T. Won, Kyung-Hwa Kim, Ki-Young Yi, Tae-Hoo
Copyright Year	2015
Abstract	Two Gram-stain-negative, yellow, aerobic and rod-shaped bacterial isolates, designated THG-DN3.18(T) and THG-DN3.19(T), were isolated from an ancient tree trunk from Daejeon, South Korea. 16S rRNA gene sequence similarity showed that both strains belong to the genus Pedobacter within the family Sphingobacteriaceae . Strain THG-DN3.18(T) exhibited maximum sequence similarity with Pedobacter boryungensis KCTC 23344(T) (98.5%) while strain THG-DN3.19(T) exhibited maximum sequence similarity with Pedobacter nyackensis LMG 24260(T) (97.3%). In DNA-DNA hybridization tests, the two strains showed less than 35% relatedness with respect to closely related species of the genus Pedobacter . Both strains contained iso-C(15 : 0) and C(16 : 1)ω6c and/or C(16 : 1)ω7c (summed feature 3) as the predominant fatty acids and MK-7 as the major isoprenoid quinone. The DNA G+C contents of strains THG-DN3.18(T) and THG-DN3.19(T) were 35.5 and 40.1 mol%, respectively. The genotypic analysis, biochemical properties, and phenotypic and chemotaxonomic characteristics indicate that strains THG-DN3.18(T) and THG-DN3.19(T) represent novel species of the genus Pedobacter , for which the names Pedobacter daejeonensis sp. nov. and Pedobacter trunci sp. nov. are proposed. The type strains are THG-DN3.18(T) ( = KCTC 42230(T) = JCM 30352(T)) and THG-DN3.19(T) ( = KCTC 42233(T) = JCM 30353(T)), respectively.
Starting Page	582
Ending Page	589
Page Count	8
File Format	PDF HTM / HTML
Alternate Webpage(s)	http://www.microbiologyresearch.org/docserver/fulltext/ijsem/65/4/1241_ijs000087.pdf?accname=guest&checksum=3CE5BA2215068215C7D9083F1334854A&expires=1542442957&id=id
Alternate Webpage(s)	http://www.microbiologyresearch.org/docserver/fulltext/ijsem/65/4/1241_ijs000087.pdf?accname=guest&checksum=8BD4D4017F90F206CA5B9B7DAF8C356F&expires=1542964679&id=id
PubMed reference number	25634950v1
Alternate Webpage(s)	https://doi.org/10.1099/ijs.0.000087
DOI	10.1099/ijs.0.000087
Journal	International journal of systematic and evolutionary microbiology
Volume Number	65
Part	4
Language	English
Access Restriction	Open
Subject Keyword	1,4-benzoquinone Contain (action) Fatty Acids Genotype Genus Isoprenoids Isoproterenol NAD(P)H dehydrogenase (quinone) 1, human Name Nucleic Acid Hybridization Pedobacter trunci Pierre Robin Syndrome Sequence Similarity Sphingobacteriaceae Thioguanine gram
Content Type	Text
Resource Type	Article

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in

Muricauda olearia sp. nov., isolated from crude-oil-contaminated seawater, and emended description of the genus Muricauda.

Flavobacterium antarcticum sp. nov., a novel psychrotolerant bacterium isolated from the Antarctic.

Sphingobacterium jejuense sp. nov., with ginsenoside-converting activity, isolated from compost.

Aureicoccus marinus gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from seawater.

Aquimarina mytili sp. nov., isolated from the gut microflora of a mussel, Mytilus coruscus, and emended description of Aquimarina macrocephali.

Lysobacter niabensis sp. nov. and Lysobacter niastensis sp. nov., isolated from greenhouse soils in Korea.

Pleionea mediterranea gen. nov., sp. nov., a gammaproteobacterium isolated from coastal seawater.

Bacillus vietnamensis sp. nov., a moderately halotolerant, aerobic, endospore-forming bacterium isolated from Vietnamese fish sauce.

Paracoccus laeviglucosivorans sp. nov., an l-glucose-utilizing bacterium isolated from soil.

Pedobacter daejeonensis sp. nov. and Pedobacter trunci sp. nov., isolated from an ancient tree trunk, and emended description of the genus Pedobacter.

Similar Documents

Muricauda olearia sp. nov., isolated from crude-oil-contaminated seawater, and emended description of the genus Muricauda.

Flavobacterium antarcticum sp. nov., a novel psychrotolerant bacterium isolated from the Antarctic.

Sphingobacterium jejuense sp. nov., with ginsenoside-converting activity, isolated from compost.

Aureicoccus marinus gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from seawater.

Aquimarina mytili sp. nov., isolated from the gut microflora of a mussel, Mytilus coruscus, and emended description of Aquimarina macrocephali.

Lysobacter niabensis sp. nov. and Lysobacter niastensis sp. nov., isolated from greenhouse soils in Korea.

Pleionea mediterranea gen. nov., sp. nov., a gammaproteobacterium isolated from coastal seawater.

Bacillus vietnamensis sp. nov., a moderately halotolerant, aerobic, endospore-forming bacterium isolated from Vietnamese fish sauce.

Paracoccus laeviglucosivorans sp. nov., an l-glucose-utilizing bacterium isolated from soil.

Pedobacter daejeonensis sp. nov. and Pedobacter trunci sp. nov., isolated from an ancient tree trunk, and emended description of the genus Pedobacter.