NDLI: msa: an R package for multiple sequence alignment

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msa: an R package for multiple sequence alignment

Content Provider	Semantic Scholar
Author	Bodenhofer, Ulrich Bonatesta, Enrico Horejs-Kainrath, Christoph Hochreiter, Sepp
Copyright Year	2015
Abstract	UNLABELLED Although the R platform and the add-on packages of the Bioconductor project are widely used in bioinformatics, the standard task of multiple sequence alignment has been neglected so far. The msa package, for the first time, provides a unified R interface to the popular multiple sequence alignment algorithms ClustalW, ClustalOmega and MUSCLE. The package requires no additional software and runs on all major platforms. Moreover, the msa package provides an R interface to the powerful package shade which allows for flexible and customizable plotting of multiple sequence alignments. AVAILABILITY AND IMPLEMENTATION msa is available via the Bioconductor project: http://bioconductor.org/packages/release/bioc/html/msa.html. Further information and the R code of the example presented in this paper are available at http://www.bioinf.jku.at/software/msa/.
Starting Page	1031
Ending Page	1034
Page Count	4
File Format	PDF HTM / HTML
Alternate Webpage(s)	http://www.bioconductor.org/packages/release/bioc/vignettes/msa/inst/doc/msa.pdf
Alternate Webpage(s)	http://bioconductor.org/packages/release/bioc/vignettes/msa/inst/doc/msa.pdf
Alternate Webpage(s)	https://www.wikidata.org/entity/Q50862023
Alternate Webpage(s)	https://bioconductor.org/packages/release/bioc/vignettes/msa/inst/doc/msa.pdf
PubMed reference number	26315911v1
Alternate Webpage(s)	https://doi.org/10.1093/bioinformatics/btv494
DOI	10.1093/bioinformatics/btv494
Journal	Bioinformatics
Volume Number	31
Issue Number	24
Language	English
Access Restriction	Open
Subject Keyword	Add-ons for Firefox Algorithm Bioconductor Bioinformatics ClustalW/ClustalX Interface Device Component MUSCLE (alignment software) Multiple sequence alignment R language
Content Type	Text
Resource Type	Article

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