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Discrimination of symbiotic/parasitic bacterial type III secretion system effector protein using principal component analysis
| Content Provider | Semantic Scholar |
|---|---|
| Author | Yuuichi, Nakano Mitsuo, Iwadate Hideaki, Umeyama |
| Copyright Year | 2013 |
| Abstract | Type III secretion system (T3SS) effector protein is a part of bacterial secretion systems. T3SS exists in the pathogenic and symbiotic bacteria. How the T3SS effector proteins in these two classes differ from each other should be interesting. In this paper, we proposed the usage of principal component analysis based linear discriminant analysis that discriminates T3SS effector proteins between plant pathogenic, animal pathogenic and plant symbiotic bacteria by the accuracy of 0.77. We also hypothesized that the feature vector proposed by Yahara et al represents protein structure, possibly protein folds defined in Structural Classification of Proteins (SCOP) database. |
| Starting Page | 1 |
| Ending Page | 8 |
| Page Count | 8 |
| File Format | PDF HTM / HTML |
| Alternate Webpage(s) | https://www.researchgate.net/profile/Y-h_Taguchi2/publication/246936430_Discrimination_of_symbioticparasitic_bacterial_type_III_secretion_system_effector_protein_using_principal_component_analysis/links/0deec51daeb534baaf000000.pdf |
| Alternate Webpage(s) | https://ipsj.ixsq.nii.ac.jp/ej/index.php?action=pages_view_main&active_action=repository_action_common_download&attribute_id=1&block_id=8&file_no=1&item_id=92652&item_no=1&page_id=13 |
| Volume Number | 2013 |
| Language | English |
| Access Restriction | Open |
| Content Type | Text |
| Resource Type | Article |
