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The complete chloroplast genome sequence of Caryodaphnopsis tonkinensis
| Content Provider | Scilit |
|---|---|
| Author | Zheng, Yuan Luo, Yana Li, Yunqing Wang, Yi |
| Copyright Year | 2019 |
| Description | The first complete chloroplast genome (cpDNA) sequence of Caryodaphnopsis tonkinensis was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 149,016 bp in length, contains a large single copy region (LSC) of 91,915 bp and a small single copy region (SSC) of 17,703 bp, which were separated by a pair of inverted repeats (IR) regions of 19,699 bp. The genome contains 126 genes, including 81 protein-coding genes, eight ribosomal RNA genes, and 36 transfer RNA genes. The overall GC content of the whole genome is 39.0%, and the corresponding values of the LSC, SSC, and IR regions are 37.7%, 34.4%, and 44.4%, respectively. Further phylogenomic analysis showed that C. tonkinensis clustered in a clade in Lauraceae family. |
| Related Links | https://www.tandfonline.com/doi/pdf/10.1080/23802359.2019.1698997?needAccess=true |
| Ending Page | 205 |
| Page Count | 2 |
| Starting Page | 204 |
| e-ISSN | 23802359 |
| DOI | 10.1080/23802359.2019.1698997 |
| Journal | Mitochondrial DNA Part B |
| Issue Number | 1 |
| Volume Number | 5 |
| Language | English |
| Publisher | Informa UK Limited |
| Publisher Date | 2020-01-02 |
| Access Restriction | Open |
| Subject Keyword | Journal: Mitochondrial Dna Part B Horticulture Caryodaphnopsis Tonkinensis Chloroplast Illumina Sequencing Phylogenetic Analysis |
| Content Type | Text |