NDLI: The use of fluorescent Nile red and BODIPY for lipid measurement in microalgae

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Year: 2016, Volume: 9

Year: 2015, Volume: 8

Year: 2015, Volume: 8, Issue: Unspecified

Impact of two ionic liquids, 1-ethyl-3-methylimidazolium acetate and 1-ethyl-3-methylimidazolium methylphosphonate, on Saccharomyces cerevisiae: metabolic, physiologic, and morphological investigations

Mechanism, kinetics and microbiology of inhibition caused by long-chain fatty acids in anaerobic digestion of algal biomass

A novel arabinose-inducible genetic operation system developed for Clostridium cellulolyticum

Phaeodactylum tricornutum photorespiration takes part in glycerol metabolism and is important for nitrogen-limited response

Identification of QTL markers contributing to plant growth, oil yield and fatty acid composition in the oilseed crop Jatropha curcas L.

Butanol production in S. cerevisiae via a synthetic ABE pathway is enhanced by specific metabolic engineering and butanol resistance

Microbial population dynamics during long-term sludge adaptation of thermophilic and mesophilic sequencing batch digesters treating sewage fine sieved fraction at varying organic loading rates

Engineering transcription factors to improve tolerance against alkane biofuels in Saccharomyces cerevisiae

Utilising the native plasmid, pCA2.4, from the cyanobacterium Synechocystis sp. strain PCC6803 as a cloning site for enhanced product production

Lipid production in association of filamentous fungi with genetically modified cyanobacterial cells

New perspective on glycoside hydrolase binding to lignin from pretreated corn stover

Synergistic effects of mixing hybrid poplar and wheat straw biomass for bioconversion processes

Elimination of hydrogenase active site assembly blocks H2 production and increases ethanol yield in Clostridium thermocellum

Down-regulation of p-coumaroyl quinate/shikimate 3′-hydroxylase (C3′H) and cinnamate 4-hydroxylase (C4H) genes in the lignin biosynthetic pathway of Eucalyptus urophylla × E. grandis leads to improved sugar release

Rapid transesterification of micro-amount of lipids from microalgae via a micro-mixer reactor

A constitutive expression system for glycosyl hydrolase family 7 cellobiohydrolases in Hypocrea jecorina

Combined cell-surface display- and secretion-based strategies for production of cellulosic ethanol with Saccharomyces cerevisiae

Multifunctional cellulase catalysis targeted by fusion to different carbohydrate-binding modules

Efficient ethanol production from dried oil palm trunk treated by hydrothermolysis and subsequent enzymatic hydrolysis

Assembly of lipase and P450 fatty acid decarboxylase to constitute a novel biosynthetic pathway for production of 1-alkenes from renewable triacylglycerols and oils

Influence of bark on fuel ethanol production from steam-pretreated spruce

Transcriptional analysis of Amorphotheca resinae ZN1 on biological degradation of furfural and 5-hydroxymethylfurfural derived from lignocellulose pretreatment

2G ethanol from the whole sugarcane lignocellulosic biomass

An industrial scale process for the enzymatic removal of steryl glucosides from biodiesel

Genome-wide analysis of the endoplasmic reticulum stress response during lignocellulase production in Neurospora crassa

Liquid-phase characterization of molecular interactions in polyunsaturated and n-fatty acid methyl esters by 1H low-field nuclear magnetic resonance

Ultrasonic intensification as a tool for enhanced microbial biofuel yields

Microbial community dynamics in replicate anaerobic digesters exposed sequentially to increasing organic loading rate, acidosis, and process recovery

A new generation of versatile chromogenic substrates for high-throughput analysis of biomass-degrading enzymes

Redesigning the regulatory pathway to enhance cellulase production in Penicillium oxalicum

Potential of lipid metabolism in marine diatoms for biofuel production

A novel bifunctional GH51 exo-α-l-arabinofuranosidase/endo-xylanase from Alicyclobacillus sp. A4 with significant biomass-degrading capacity

Discovery of the combined oxidative cleavage of plant xylan and cellulose by a new fungal polysaccharide monooxygenase

Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii

Characterization of a copper responsive promoter and its mediated overexpression of the xylanase regulator 1 results in an induction-independent production of cellulases in Trichoderma reesei

Autohydrolysis pretreatment of Arundo donax: a comparison between microwave-assisted batch and fast heating rate flow-through reaction systems

Effect of Brassica napus cultivar on cellulosic ethanol yield

Eubacteria and archaea communities in seven mesophile anaerobic digester plants in Germany

Low oxygen levels contribute to improve photohydrogen production in mixotrophic non-stressed Chlamydomonas cultures

Restoration of female fertility in Trichoderma reesei QM6a provides the basis for inbreeding in this industrial cellulase producing fungus

Metabolic modeling of synthesis gas fermentation in bubble column reactors

Fungal-assisted algal flocculation: application in wastewater treatment and biofuel production

Large-scale robot-assisted genome shuffling yields industrial Saccharomyces cerevisiae yeasts with increased ethanol tolerance

Electrolytic extraction drives volatile fatty acid chain elongation through lactic acid and replaces chemical pH control in thin stillage fermentation

Computational inference of the structure and regulation of the lignin pathway in Panicum virgatum

A bioenergetic assessment of photosynthetic growth of Synechocystis sp. PCC 6803 in continuous cultures

Combining free and aggregated cellulolytic systems in the cellulosome-producing bacterium Ruminiclostridium cellulolyticum

Trichoderma reesei meiosis generates segmentally aneuploid progeny with higher xylanase-producing capability

Bioelectrochemical production of hydrogen in an innovative pressure-retarded osmosis/microbial electrolysis cell system: experiments and modeling

Coupled enzymatic hydrolysis and ethanol fermentation: ionic liquid pretreatment for enhanced yields

An integrated approach for efficient biomethane production from solid bio-wastes in a compact system

Rapid estimation of sugar release from winter wheat straw during bioethanol production using FTIR-photoacoustic spectroscopy

Detoxification of 5-hydroxymethylfurfural by the Pleurotus ostreatus lignolytic enzymes aryl alcohol oxidase and dehydrogenase

Bioflocculant production from untreated corn stover using Cellulosimicrobium cellulans L804 isolate and its application to harvesting microalgae

Biofilm formation by designed co-cultures of Caldicellulosiruptor species as a means to improve hydrogen productivity

Development of a stress-induced mutagenesis module for autonomous adaptive evolution of Escherichia coli to improve its stress tolerance

Identification of furfural resistant strains of Saccharomyces cerevisiae and Saccharomyces paradoxus from a collection of environmental and industrial isolates

Bio-butanol production from glycerol with Clostridium pasteurianum CH4: the effects of butyrate addition and in situ butanol removal via membrane distillation

Genome-wide transcriptional analysis suggests hydrogenase- and nitrogenase-mediated hydrogen production in Clostridium butyricum CWBI 1009

Cellobiohydrolase and endoglucanase respond differently to surfactants during the hydrolysis of cellulose

The first draft genome of the aquatic model plant Lemna minor opens the route for future stress physiology research and biotechnological applications

Characterization of hemicellulase and cellulase from the extremely thermophilic bacterium Caldicellulosiruptor owensensis and their potential application for bioconversion of lignocellulosic biomass without pretreatment

Inducible gene expression system by 3-hydroxypropionic acid

Generation of random mutants to improve light-use efficiency of Nannochloropsis gaditana cultures for biofuel production

Adaptation of Scheffersomyces stipitis to hardwood spent sulfite liquor by evolutionary engineering

Metabolic engineering of Bacillus subtilis for redistributing the carbon flux to 2,3-butanediol by manipulating NADH levels

Substrate specificity and regioselectivity of fungal AA9 lytic polysaccharide monooxygenases secreted by Podospora anserina

Characterization of lignin derived fromwater-only and dilute acid flowthrough pretreatment of poplar wood at elevatedtemperatures

Insertion of a xylanase in xylose binding protein results in a xylose-stimulated xylanase

Development of Agave as a dedicated biomass source: production of biofuels from whole plants

Towards a deeper understanding of structural biomass recalcitrance using phase-contrast tomography

Complex and extensive post-transcriptional regulation revealed by integrative proteomic and transcriptomic analysis of metabolite stress response in Clostridium acetobutylicum

Erratum to: A novel solid state fermentation coupled with gas stripping enhancing the sweet sorghum stalk conversion performance for bioethanol

Metabolic engineering of Escherichia coli for production of (2S,3S)-butane-2,3-diol from glucose

New generation biofuel: continuous acidogenesis of sucrose-raffinose mixture simulating vinasse is promoted by γ-alumina pellets

Expression of the Acidothermus cellulolyticus E1 endoglucanase in Caldicellulosiruptor bescii enhances its ability to deconstruct crystalline cellulose

Leaf-residing Methylobacterium species fix nitrogen and promote biomass and seed production in Jatropha curcas

Xpp1 regulates the expression of xylanases, but not of cellulases in Trichoderma reesei

Tolerance and adaptive evolution of triacylglycerol-producing Rhodococcus opacus to lignocellulose-derived inhibitors

Lignocellulose conversion for biofuel: a new pretreatment greatly improves downstream biocatalytic hydrolysis of various lignocellulosic materials

Cellobionic acid utilization: from Neurospora crassa to Saccharomyces cerevisiae

Cellulosic ethanol production by natural bacterial consortia is enhanced by Pseudoxanthomonas taiwanensis

Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis

Genetic basis of the highly efficient yeast Kluyveromyces marxianus: complete genome sequence and transcriptome analyses

Transcriptome analysis of Zymomonas mobilis ZM4 reveals mechanisms of tolerance and detoxification of phenolic aldehyde inhibitors from lignocellulose pretreatment

Localization of polyhydroxybutyrate in sugarcane using Fourier-transform infrared microspectroscopy and multivariate imaging

Methodology for enabling high-throughput simultaneous saccharification and fermentation screening of yeast using solid biomass as a substrate

Oleaginous yeast platform for producing biofuels via co-solvent hydrothermal liquefaction

Bioenergy and African transformation

Contribution of a family 1 carbohydrate-binding module in thermostable glycoside hydrolase 10 xylanase from Talaromyces cellulolyticus toward synergistic enzymatic hydrolysis of lignocellulose

Short-term adaptation during propagation improves the performance of xylose-fermenting Saccharomyces cerevisiae in simultaneous saccharification and co-fermentation

Cellulosic ethanol production via consolidated bioprocessing at 75 °C by engineered Caldicellulosiruptor bescii

Transcriptomic analysis revealed the mechanism of oil dynamic accumulation during developing Siberian apricot (Prunus sibirica L.) seed kernels for the development of woody biodiesel

High titer and yield ethanol production from undetoxified whole slurry of Douglas-fir forest residue using pH profiling in SPORL

Sugar loss and enzyme inhibition due to oligosaccharide accumulation during high solids-loading enzymatic hydrolysis

Bioaugmentation of Lactobacillus delbrueckii ssp. bulgaricus TISTR 895 to enhance bio-hydrogen production of Rhodobacter sphaeroides KKU-PS5

Expression of a heat-stable NADPH-dependent alcohol dehydrogenase in Caldicellulosiruptor bescii results in furan aldehyde detoxification

Untreated Chlorella homosphaera biomass allows for high rates of cell wall glucan enzymatic hydrolysis when using exoglucanase-free cellulases

Ozone detoxification of steam-pretreated Norway spruce

Phylogeny-structured carbohydrate metabolism across microbiomes collected from different units in wastewater treatment process

Identification of a laccase Glac15 from Ganoderma lucidum 77002 and its application in bioethanol production

Enzyme activity highlights the importance of the oxidative pentose phosphate pathway in lipid accumulation and growth of Phaeodactylum tricornutum under CO2 concentration

The use of fluorescent Nile red and BODIPY for lipid measurement in microalgae

Designer synthetic media for studying microbial-catalyzed biofuel production

Chemical and structural changes associated with Cu-catalyzed alkaline-oxidative delignification of hybrid poplar

A novel population balance model for the dilute acid hydrolysis of hemicellulose

Transcriptomic analysis of lignocellulosic biomass degradation by the anaerobic fungal isolate Orpinomyces sp. strain C1A

Increasing proline and myo-inositol improves tolerance of Saccharomyces cerevisiae to the mixture of multiple lignocellulose-derived inhibitors

Hydroxyl radical-aided thermalpretreatment of algal biomass for enhanced biodegradability

Controlling microbial contamination during hydrolysis of AFEX-pretreated corn stover and switchgrass: effects on hydrolysate composition, microbial response and fermentation

Gaseous ammonia pretreatment lowers the required energy input for fine milling-enhanced enzymatic saccharification of switchgrass

Rapid analysis of composition and reactivity in cellulosic biomass feedstocks with near-infrared spectroscopy

Butanol production from food waste: a novel process for producing sustainable energy and reducing environmental pollution

High production of 2,3-butanediol from biodiesel-derived crude glycerol by metabolically engineered Klebsiella oxytoca M1

Biomass accessibility analysis using electron tomography

Preservation of microbial communities enriched on lignocellulose under thermophilic and high-solid conditions

Downregulation of GAUT12 in Populus deltoides by RNA silencing results in reduced recalcitrance, increased growth and reduced xylan and pectin in a woody biofuel feedstock

A transcriptomic analysis of Neurospora crassa using five major crop residues and the novel role of the sporulation regulator rca-1 in lignocellulase production

From wheat straw to bioethanol: integrative analysis of a separate hydrolysis and co-fermentation process with implemented enzyme production

Identification of novel metabolic interactions controlling carbon flux from xylose to ethanol in natural and recombinant yeasts

Advancing understanding of microbial bioenergy conversion processes by activity-based protein profiling

Enhancement of glycerol metabolism in the oleaginous marine diatom Fistulifera solaris JPCC DA0580 to improve triacylglycerol productivity

The difference in effective light penetration may explain the superiority in photosynthetic efficiency of attached cultivation over the conventional open pond for microalgae

pH-induced change in cell susceptibility to butanol in a high butanol-tolerant bacterium, Enterococcus faecalis strain CM4A

Functional relationship of furfural yields and the hemicellulose-derived sugars in the hydrolysates from corncob by microwave-assisted hydrothermal pretreatment

Lignin degradation in corn stalk by combined method of H2O2 hydrolysis and Aspergillus oryzae CGMCC5992 liquid-state fermentation

Enhanced short chain fatty acids production from waste activated sludge conditioning with typical agricultural residues: carbon source composition regulates community functions

Efficient conversion of acetate into lipids by the oleaginous yeast Cryptococcus curvatus

Annual acknowledgement of manuscript reviewers

Developing a mesophilic co-culture for direct conversion of cellulose to butanol in consolidated bioprocess

Rational design of polymer-based absorbents: application to the fermentation inhibitor furfural

Alleviation of carbon catabolite repression in Enterobacter aerogenes for efficient utilization of sugarcane molasses for 2,3-butanediol production

Improved glycerol utilization by a triacylglycerol-producing Rhodococcus opacus strain for renewable fuels

Restricting lignin and enhancing sugar deposition in secondary cell walls enhances monomeric sugar release after low temperature ionic liquid pretreatment

Systematic evaluation of the degraded products evolved from the hydrothermal pretreatment of sweet sorghum stems

Enhanced direct fermentation of cassava to butanol by Clostridium species strain BOH3 in cofactor-mediated medium

A metabolomics-based strategy for identification of gene targets for phenotype improvement and its application to 1-butanol tolerance in Saccharomyces cerevisiae

Effects of overexpression of a bHLH transcription factor on biomass and lipid production in Nannochloropsis salina

Uniconazole-induced starch accumulation in the bioenergy crop duckweed (Landoltia punctata) I: transcriptome analysis of the effects of uniconazole on chlorophyll and endogenous hormone biosynthesis

Optimized inorganic carbon regime for enhanced growth and lipid accumulation in Chlorella vulgaris

On-farm solid state simultaneous saccharification and fermentation of whole crop forage rice in wrapped round bale for ethanol production

Simultaneous utilization of glucose and xylose for lipid accumulation in black soldier fly

Physiological roles of pyruvate ferredoxin oxidoreductase and pyruvate formate-lyase in Thermoanaerobacterium saccharolyticum JW/SL-YS485

Continuous succinic acid production by Actinobacillus succinogenes on xylose-enriched hydrolysate

Mechanism of lignin inhibition of enzymatic biomass deconstruction

Precipitate obtained following membrane separation of hydrothermally pretreated rice straw liquid revealed by 2D NMR to have high lignin content

In situ micro-spectroscopic investigation of lignin in poplar cell walls pretreated by maleic acid

Influence of corn oil recovery on life-cycle greenhouse gas emissions of corn ethanol and corn oil biodiesel

Quantitative 13C MultiCP solid-state NMR as a tool for evaluation of cellulose crystallinity index measured directly inside sugarcane biomass

Comparison of four outdoor pilot-scale photobioreactors

How chip size impacts steam pretreatment effectiveness for biological conversion of poplar wood into fermentable sugars

Insight into metabolic pathways of the potential biofuel producer, Paenibacillus polymyxa ICGEB2008

Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus

Winter rye as a bioenergy feedstock: impact of crop maturity on composition, biological solubilization and potential revenue

Lignin engineering through laccase modification: a promising field for energy plant improvement

Lipid recovery from a vegetable oil emulsion using microbial enrichment cultures

Transcriptomic analysis of a moderately growing subisolate Botryococcus braunii 779 (Chlorophyta) in response to nitrogen deprivation

High concentrations of dried sorghum stalks as a biomass feedstock for single cell oil production by Rhodosporidium toruloides

Metabolic engineering of Saccharomyces cerevisiae for production of fatty acid short- and branched-chain alkyl esters biodiesel

Exploitation of algal-bacterial associations in a two-stage biohydrogen and biogas generation process

Visualization of Miscanthus × giganteus cell wall deconstruction subjected to dilute acid pretreatment for enhanced enzymatic digestibility

Clostridium thermocellum DSM 1313 transcriptional responses to redox perturbation

Periodic-peristole agitation for process enhancement of butanol fermentation

Metabolic pathway engineering for production of 1,2-propanediol and 1-propanol by Corynebacterium glutamicum

Characterization of cell wall components of wheat bran following hydrothermal pretreatment and fractionation

Simultaneous hydrogen and ethanol production from cascade utilization of mono-substrate in integrated dark and photo-fermentative reactor

Awakening the endogenous Leloir pathway for efficient galactose utilization by Yarrowia lipolytica

Evaluating the effects of biocompatible cholinium ionic liquids on microbial lipid production by Trichosporon fermentans

Assessment of drought tolerance of 49 switchgrass (Panicum virgatum) genotypes using physiological and morphological parameters

Microalgal triacylglycerides production in outdoor batch-operated tubular PBRs

Enhancement of photosynthetic capacity in Euglena gracilis by expression of cyanobacterial fructose-1,6-/sedoheptulose-1,7-bisphosphatase leads to increases in biomass and wax ester production

Quantitative analysis of an engineered CO2-fixing Escherichia coli reveals great potential of heterotrophic CO2 fixation

Positional preferences of acetyl esterases from different CE families towards acetylated 4-O-methyl glucuronic acid-substituted xylo-oligosaccharides

Combinatory strategy for characterizing and understanding the ethanol synthesis pathway in cyanobacteria cell factories

Anaerobic detoxification of acetic acid in a thermophilic ethanologen

Uniconazole-induced starch accumulation in the bioenergy crop duckweed (Landoltia punctata) II: transcriptome alterations of pathways involved in carbohydrate metabolism and endogenous hormone crosstalk

Construction of a self-cloning system in the unicellular green alga Pseudochoricystis ellipsoidea

Aspergillus nidulans protein kinase A plays an important role in cellulase production

Highly efficient enzymatic biodiesel production promoted by particle-induced emulsification

Improving a recombinant Zymomonas mobilis strain 8b through continuous adaptation on dilute acid pretreated corn stover hydrolysate

A novel biocatalyst for efficient production of 2-oxo-carboxylates using glycerol as the cost-effective carbon source

Transcriptional analysis of Kluyveromyces marxianus for ethanol production from inulin using consolidated bioprocessing technology

Semi-continuous anaerobic digestion for biogas production: influence of ammonium acetate supplement and structure of the microbial community

Involvement of the adaptor protein 3 complex in lignocellulase secretion in Neurospora crassa revealed by comparative genomic screening

RNA-Seq transcriptomic analysis with Bag2D software identifies key pathways enhancing lipid yield in a high lipid-producing mutant of the non-model green alga Dunaliella tertiolecta

Increased enzymatic hydrolysis of sugarcane bagasse from enzyme recycling

Evaluation of hydrophobic micro-zeolite-mixed matrix membrane and integrated with acetone–butanol–ethanol fermentation for enhanced butanol production

Single-cell screening of photosynthetic growth and lactate production by cyanobacteria

Microalgal lipid production using the hydrolysates of rice straw pretreated with gamma irradiation and alkali solution

Harnessing the potential of LPMO-containing cellulase cocktails poses new demands on processing conditions

Aspergillus niger membrane-associated proteome analysis for the identification of glucose transporters

Metabolic engineering of microbes for branched-chain biodiesel production with low-temperature property

Engineering a novel glucose-tolerant β-glucosidase as supplementation to enhance the hydrolysis of sugarcane bagasse at high glucose concentration

Engineering Yarrowia lipolytica to produce biodiesel from raw starch

Analysis of Clostridium beijerinckii NCIMB 8052’s transcriptional response to ferulic acid and its application to enhance the strain tolerance

Automated nutrient screening system enables high-throughput optimisation of microalgae production conditions

Model-driven intracellular redox status modulation for increasing isobutanol production in Escherichia coli

Simultaneous improvement in production of microalgal biodiesel and high-value alpha-linolenic acid by a single regulator acetylcholine

The core populations and co-occurrence patterns of prokaryotic communities in household biogas digesters

Deconstructing the genetic basis of spent sulphite liquor tolerance using deep sequencing of genome-shuffled yeast

Deletion of homologs of the SREPB pathway results in hyper-production of cellulases in Neurospora crassa and Trichoderma reesei

Bacteriophage application restores ethanol fermentation characteristics disrupted by Lactobacillus fermentum

Whole-genome sequence of an evolved Clostridium pasteurianum strain reveals Spo0A deficiency responsible for increased butanol production and superior growth

Bioenergetic constraints for conversion of syngas to biofuels in acetogenic bacteria

Trace element and temperature effects on microbial communities and links to biogas digester performance at high ammonia levels

Year: 2015, Volume: 7

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Year: 2012, Volume: 5

Year: 2011, Volume: 4

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Year: 2008, Volume: 1

The use of fluorescent Nile red and BODIPY for lipid measurement in microalgae

Content Provider	PubMed Central
Author	Rumin, Judith Bonnefond, Hubert Saint Jean, Bruno Rouxel, Catherine Sciandra, Antoine Bernard, Olivier Cadoret, Jean-paul Bougaran, Gaël
Abstract	Microalgae are currently emerging as one of the most promising alternative sources for the next generation of food, feed, cosmetics and renewable energy in the form of biofuel. Microalgae constitute a diverse group of microorganisms with advantages like fast and efficient growth. In addition, they do not compete for arable land and offer very high lipid yield potential. Major challenges for the development of this resource are to select lipid-rich strains using high-throughput staining for neutral lipid content in microalgae species. For this purpose, the fluorescent dyes most commonly used to quantify lipids are Nile red and BODIPY 505/515. Their fluorescent staining for lipids offers a rapid and inexpensive analysis tool to measure neutral lipid content, avoiding time-consuming and costly gravimetric analysis. This review collates and presents recent advances in algal lipid staining and focuses on Nile red and BODIPY 505/515 staining characteristics. The available literature addresses the limitations of fluorescent dyes under certain conditions, such as spectral properties, dye concentrations, cell concentrations, temperature and incubation duration. Moreover, the overall conclusion of the present review study gives limitations on the use of fluorochrome for screening of lipid-rich microalgae species and suggests improved protocols for staining recalcitrant microalgae and recommendations for the staining quantification.
Related Links	http://dx.doi.org/10.1186/s13068-015-0220-4
Starting Page	42
File Format	PDF
ISSN	17546834
e-ISSN	17546834
Journal	Biotechnology for Biofuels
Volume Number	8
Language	English
Publisher	BioMed Central
Publisher Date	2015-01-01
Access Restriction	Open
Rights Holder	BioMed Central
Subject Keyword	Research in Higher Education
Content Type	Text
Resource Type	Article
Subject	Renewable Energy, Sustainability and the Environment Management, Monitoring, Policy and Law Applied Microbiology and Biotechnology Biotechnology

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