NDLI: An Altered Transition State for the Reaction of an RNA Model Catalyzed by a Dinuclear Zinc(II) Catalyst

Content Provider	PubMed Central
Author	Humphry, Tim Iyer, Subashree Iranzo, Olga Morrow, Janet R. Richard, John P. Paneth, Piotr Hengge, Alvan C.
Abstract	The cyclization of 2-hydroxypropyl-4-nitrophenyl phosphate (HpPNP) catalyzed by the dinuclear zinc complex of 1,3-bis(1,4,7-triazacyclonon-1-yl)-2-hydroxypropane (1) proceeds by a transition state that is different from that of the uncatalyzed reaction. Kinetic isotope effects (KIEs) measured in the nucleophilic atom and in the leaving group show that the uncatalyzed cyclization has a transition state (TS) with little phosphorus-oxygen bond fission to the leaving group (18 k lg = 1.0064 ± 0.0009 and 15 k = 1.0002 ± 0.0002), and that nucleophilic bond formation occurs in the rate-determining step (18 k nuc = 1.0326 ± 0.0008). In the catalyzed reaction, larger leaving group isotope effects (18 k lg = 1.0113 ± 0.0005 and 15 k = 1.0015 ± 0.0005) and a smaller nucleophile isotope effect (18 k nuc = 1.0116 ± 0.0010) indicate a later TS with greater leaving group bond fission, and greater nucleophilic bond formation. These observed nucleophile KIEs are the combined effect of the equilibrium effect on deprotonation of the 2’-hydroxyl nucleophile and the KIE on the nucleophilic step. An EIE of 1.0245 for deprotonation of the hydroxyl group of HPpNP was obtained computationally. The different KIEs for the two reactions indicate that the effective catalysis by 1 is accompanied by selection for an altered transition state, presumably arising from the preferential stabilization by the catalyst of charge away from the nucleophile and toward the leaving group. These results demonstrate the potential for a catalyst using biologically relevant metal ions to select for an altered transition state for phosphoryl transfer.
Related Links	http://dx.doi.org/10.1021/ja8059864
Ending Page	17866
Page Count	9
Starting Page	17858
File Format	PDF
ISSN	00027863
e-ISSN	15205126
Journal	Journal of the American Chemical Society
Issue Number	52
Volume Number	130
Language	English
Publisher Date	2008-12-31
Access Restriction	Open
Subject Keyword	Colloid and Surface Chemistry Biochemistry Chemistry(all) Catalysis Research in Higher Education
Content Type	Text
Resource Type	Article
Subject	Chemistry Colloid and Surface Chemistry Biochemistry Catalysis

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