NDLI: ARAMEMNON, a Novel Database for Arabidopsis Integral Membrane Proteins1

Content Provider	PubMed Central
Author	Schwacke, Rainer Schneider, Anja Graaff, Eric Van Der Fischer, Karsten Catoni, Elisabetta Desimone, Marcelo Frommer, Wolf B. Flügge, Ulf-ingo Kunze, Reinhard
Copyright Year	2003
Abstract	A specialized database (DB) for Arabidopsis membrane proteins, ARAMEMNON, was designed that facilitates the interpretation of gene and protein sequence data by integrating features that are presently only available from individual sources. Using several publicly available prediction programs, putative integral membrane proteins were identified among the approximately 25,500 proteins in the Arabidopsis genome DBs. By averaging the predictions from seven programs, approximately 6,500 proteins were classified as transmembrane (TM) candidate proteins. Some 1,800 of these contain at least four TM spans and are possibly linked to transport functions. The ARAMEMNON DB enables direct comparison of the predictions of seven different TM span computation programs and the predictions of subcellular localization by eight signal peptide recognition programs. A special function displays the proteins related to the query and dynamically generates a protein family structure. As a first set of proteins from other organisms, all of the approximately 700 putative membrane proteins were extracted from the genome of the cyanobacterium Synechocystis sp. and incorporated in the ARAMEMNON DB. The ARAMEMNON DB is accessible at the URL http://aramemnon.botanik.uni-koeln.de.
Related Links	http://dx.doi.org/10.1104/pp.011577
Ending Page	26
Page Count	11
Starting Page	16
File Format	PDF
ISSN	00320889
e-ISSN	15322548
Journal	Plant Physiology
Issue Number	1
Volume Number	131
Language	English
Publisher	American Society of Plant Biologists
Publisher Date	2003-01-01
Access Restriction	Open
Rights Holder	American Society of Plant Biologists
Subject Keyword	Plant Science Genetics Physiology Research in Higher Education
Content Type	Text
Resource Type	Article
Subject	Genetics Physiology Plant Science

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