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Gramene: a bird's eye view of cereal genomes
| Content Provider | Paperity |
|---|---|
| Author | Mccouch, Susan Zhao, Wei Fogleman, Molly Schmidt, Steven Ware, Doreen Liang, Chengzhi Stein, Lincoln Ni, Junjian Ratnapu, Kiran Youens-clark, Ken Ren, Liya Jaiswal, Pankaj Hebbard, Claire Avraham, Shuly Spooner, William Buckler, Edward S. Canaran, Payan Casstevens, Terry M. Yap, Immanuel Faga, Benjamin |
| Abstract | Rice, maize, sorghum, wheat, barley and the other major crop grasses from the family Poaceae (Gramineae) are mankind's most important source of calories and contribute tens of billions of dollars annually to the world economy (FAO 1999, http://www.fao.org; USDA 1997, http://www.usda.gov). Continued improvement of Poaceae crops is necessary in order to continue to feed an ever-growing world population. However, of the major crop grasses, only rice (Oryza sativa), with a compact genome of ∼400 Mbp, has been sequenced and annotated. The Gramene database (http://www.gramene.org) takes advantage of the known genetic colinearity (synteny) between rice and the major crop plant genomes to provide maize, sorghum, millet, wheat, oat and barley researchers with the benefits of an annotated genome years before their own species are sequenced. Gramene is a one stop portal for finding curated literature, genetic and genomic datasets related to maps, markers, genes, genomes and quantitative trait loci. The addition of several new tools to Gramene has greatly facilitated the potential for comparative analysis among the grasses and contributes to our understanding of the anatomy, development, environmental responses and the factors influencing agronomic performance of cereal crops. Since the last publication on Gramene database by D. H. Ware, P. Jaiswal, J. Ni, I. V. Yap, X. Pan, K. Y. Clark, L. Teytelman, S. C. Schmidt, W. Zhao, K. Chang et al. [(2002), Plant Physiol., 130, 1606–1613], the database has undergone extensive changes that are described in this publication. |
| Starting Page | D717 |
| Ending Page | D723 |
| File Format | HTM / HTML |
| ISSN | 03051048 |
| DOI | 10.1093/nar/gkj154 |
| Issue Number | 1 |
| Journal | Nucleic Acids Research |
| Volume Number | 34 |
| e-ISSN | 13624962 |
| Language | English |
| Publisher | Oxford University Press |
| Publisher Date | 2006-01-01 |
| Access Restriction | Open |
| Content Type | Text |
| Resource Type | Article |
| Subject | Genetics |
