NDLI: Protein Structure Computation

Please wait, while we are loading the content...

2007 Frontiers in the Convergence of Bioscience and Information Technologies

Message from the Conference Chairs

About FBIT 2007

Signaling Networks Involved in Retinal Degeneration in Mice

Proteomic Analysis of a Response to Long-Chain Fatty Acid in Escherichia coli and Its Application

Modeling of the Effect of Crosstalk in Apoptotic Pathways on Caspase-3 Activation

Screening of Apoptotic Genes by Morphological Analysis of High Throughput Fluorescence Microscopy Images

Isolation and Characterization of Salt-sensitive Mutants of the Moderately Halophilic Bacterium, Salinivibrio sp. DL6

Simulating Biological Pathways with a Continuous Petri Net Using Runge-Kutta Methods

Reconstruction of Gene Regulatory Networks by Neuro-fuzzy Inference Systems

In silico Ligand-Based (LB) and Docking-Based (DB) 3D-QSAR Study of Potent Chk2 Inhibitors

Relationships between Structures of Hydroxyflavone Derivatives and their Anti-oxidative Activities

The Receptor Guided 3D-QSAR Method is a Powerful Tool to Design More Potent IGF-1R Inhibitors

ConPath: Scaffold Analysis Tool Using Mate-Pair Information for Genome Sequencing

A Method for Evaluating Quality of Clustering DNA Fragments Encoded in Different Nucleotide Frequencies

A Novel Screening Method of Dextran Binding Antibody Using Phage Display Libraries

A Simple DNA Chip for Diagnosis of Most Common Corneal Dystrophies Caused by ßigh3 Gene Mutations

MarSelHR: A Haplotype Reconstruction System Using Linkage Disequilibrium

Chronic Hepatitis Classification Using SNP Data and Data Mining Techniques

A New Stilbene Synthase Gene from Muscadine (Vitis rotundifolia) Grape Berry

Prediction of Interacting Motif Pairs Using Stochastic Boosting

Resonant Recognition Model for Prediction of 'Lead-In Regions' in Proteins

Analysis of HCV Envelope Proteins Interacting with Human Proteins

Discovering Inter-Domain Paths between Hepatitis C Virus NS5A and Human Liver Proteins

Multi-Layered Networks for Visualizing the Interactions between Heterogeneous Proteins

A Study of Protein Secondary Structure Hydrogen Bonds under Oxidizing Conditions

Computational Strategies for Protein Quantitation in 2D Electrophoresis Gel Image Processor for Matlab

Protein Structure Computation

Estimating the Reliability of Protein-Protein Interactions

Protein Classification by Matching 3D Structures

Classification of Cell Membrane Proteins

Identifying Functional Groups by Finding Cliques and Near-Cliques in Protein Interaction Networks

Feature Extraction in Spatially-Conserved Regions and Protein Functional Classification

Proteomic Approach to Screen Peanut Genotypes with Enhanced Nutritional Qualities

A Graph-Theoretic Classification of Gene Expression Microarray Data of Cancer

A Direct Clustering Method for Imperfect Microarray Data without Imputation

k-TSN(k-Top Scoring N): Microarray Data Classification Based on Rank-Comparison Decision Rules

DNA Microarray Classification with Compact Single Hidden-Layer FeedForward Neural Networks

Detecting Regulator-Target Gene Pairs from Expression Profile of Microarray

An Efficient Two-Phase Algorithm to Find Gene-Specific Probes for Large Genomes

Selecting Informative Genes from Microarray Data for Cancer Classification with Genetic Programming Classifier Using K-Means Clustering and SNR Ranking

Three Dimensional Chaos Game Representation of Genomic Sequences

Multifractal Analysis of Chaos Game Representation Images of Mitochondrial DNA

Improving Training Speed of Support Vector Machines by Creating Exploitable Trends of Lagrangian Variables: An Application to DNA Splice Site Detection

Towards Interactive Visualization for Exploring Conserved Motifs in Noncoding DNA Sequence

Early, Easy, Inexpensive Diagnosis An Urgent Need for Global TB Control

Signal Analysis of Pathogens' Genomic Sequences

CglE's Role in Meningitic E. coli K1 Infection and Energy Metabolism Defined by Bioinformatic and Molecular Characterization

Bioinformatics Analysis of the Envelope Glycoprotein and Construction of Infectious RNA Transcripts of Dengue Virus

B-cell Epitope Mapping of Helicobacter pylori Neutrophil-Activating Protein

Game Theory Models for Infectious Diseases

Role of Monocytes and Macrophages in Pathogenesis of SARS

Principal Component Analysis of Infectomes in Human Brain Endothelial Cell after C. neoformans Infection

Genomic Survey of Cryptococcus neoformans-Induced Gene Expression Profiling in Human Brain Micro-Vascular Endothelial Cells

Mathematical Modeling of Dynamic Host Responses to HBV Infection

Classification of LARGE-liked GlcNAc-Transferases of Dictyostelium discoideum by Phylogenetic Analysis

Molecular Mimicry between SARS Coronavirus Spike Protein and Human Protein

Phylogenetic Analysisof Trichomonade Xylosyltransferases

Crystal Structures and Computer Screened Inhibitors of Helicobacter pylori Undecaprenyl Pyrophosphate Synthase

Structural Rationale for Differential Carbohydrate Recognition by Barley and Fibrobacter succinogenes 1,3-1,4-ß-D-Glucanases

Unsupervised Learning in Spectral Genome Analysis

Evolution by Communication: A Revision of Sperm-Mediated Gene Transfer

A Web-Based Interactive Monitoring System for Molecular Simulation

A Fast Heuristic Algorithm for Similarity Search in Large DNA Databases

Genetic Algorithm Approach to Construction of Specialized Multi-Classifier Systems: Application to DNA Analysis

Classification of Unbalanced Medical Data with Weighted Regularized Least Squares

Knowledge Discovery via Incremental Learning

A Proposed Decision-Support System for (Renal) Cancer Imaging

Early Detection of Prostate Cancer with Classifier Ensembles

Apply GM(h,N) Model to Analyze the Influence Factor in Cervical Cancer Screening

Mammography Phantom Studies Using 3D Electrical Impedance Tomography with Numerical Forward Solver

Textural Classification of Mammographic Parenchymal Patterns with the SONNET Self-Organizing Neural Network

Initial Exploitation of the SONNET Derived Taxonomy of Mammographic Parenchymal Patterns

Computer-Aided Diagnosis of Cross-Institutional Mammograms Using Support Vector Machines with Feature Elimination

Biologically-Inspired Adaptive Learning: A Near Set Approach

Evaluation of a Dominance-Based Rough Set Approach to Interface Design

Rough Set Based Information Retrieval from Argumentative Data Points in Weblogs

On the Use of Rough Sets for Artefact Extraction from EEG Datasets

Approximation Degrees in Decision Reduct-Based MRI Segmentation

Rough Sets and Few-Objects-Many-Attributes Problem: The Case Study of Analysis of Gene Expression Data Sets

Measurement and Analysis of Yes and No Responses by Auditory Stimuli Questions in Human EEG

Determination of Effects of Different Music on Frontal Muscle by Using EMG Signal

A Neurostimulator Design for Long-term Animal Experiments

Learning to Decode Instantaneous Cognitive States from Brain Images

Hippocampus Shape-Space Analysis of Clinically Depressed, High Risk, and Control Populations

Brain Differences Visualized in the Blind Using Tensor Manifold Statistics and Diffusion Tensor Imaging

Validation of Alternating Kernel Mixture Method Based Segmentation of the Human Brain

Mapping Genetic Influences on Brain Shape Using Multi-Atlas Fluid Image Alignment

A Fast and Robust Approach to Liver Nodule Detection in MR Images

The Defect Detection Using Human Visual System and Wavelet Transform in TFT-LCD Image

Joint Reconstruction and Registration Using Level Sets: Application to the Computer-Aided Ablation of Atrial Fibrillation

Parametric Reconstruction of Boundaries and Surfaces for Medical Imaging

A Conformal Mapping Approach for Shoe Last Design

Quantitative Analysis of Colonoscopy Skills Using the KAIST-Ewha Colonoscopy Simulator II

Haptic Rendering of Drilling into Femur Bone with Graded Stiffness

A Pilot Study of a Thermal Display Using a Miniature Tactor for Upper Extremity Prosthesis

A Miniature Tactor Design for Upper Extremity Prosthesis

Design and Applications of a Pen-Like Haptic Interface with Texture and Vibrotactile Display

An Efficient Soft Tissue Characterization Method for Haptic Rendering of Soft Tissue Deformation in Medical Simulation

Discrimination of Virtual Environments Under Visual and Haptic Rendering Delays

Modeling of Light Propagation through Biological Tissues: A Novel Approach

Micro-Injection System for Localized Drug Delivery Using Embedded Solid Chemical Propellant

Bio-Inspired Microsystem for Robust Genetic Assay Recognition

Analysis and Optimization of a Wireless Communication System for an Ingestable Sensor Microsystem

Fractal Analysis of Umbilical Artery Doppler Signals from Normal Pregnant Subject Using Hurst Exponent

Calculation of Joint Reaction Forces in the Equine Distal Forelimb during Walking and Trotting

Towards a Mobile and Context-Aware Technology Based Healthcare System

Ontology-Based Semi-automatic Construction of Bayesian Network Models for Diagnosing Diseases in E-health Applications

Articulatory Reproduction of Voices of Hearing-Impaired by a Talking Robot

Speech Enhancement Using Masking of Noisy Power Estimates

Speech Enhancement Using Gain Function of Noisy Power Estimates and Linear Regression

3D Gaze Tracking and Analysis for Attentive Human Computer Interaction

3D Environment Modeling and its Application to Human Robot Interaction

Usability Evaluation of Humanoid-Animation Avatar with Physiological Signals

Bounded Incremental Real-Time Dynamic Programming

Learning to Drive a Real Car in 20 Minutes

Integrated Heterogeneous Multi-Robot System for Collaborative Navigation

Study of the Beverton-Holt Equation from a Control Theory Point of View

A Bioinformatics Based Approach to Behavioural Biometrics

Fingerprint Watermarking for H.264 Streaming Media

Fingerprint Verification Based on Absolute Distance and Intelligent BPNN

Neural Network Based Biometric Personal Identification

FuzzyHash: A Secure Biometric Template Protection Technique

U-City User Authentication Methods and Encryption Techniques Based on Biometric Technology

A Context-Aware Statistical Ontology Approach for Adaptive Face Recognition

Performance Evaluation Model for the Face Recognition System

Biometric Certificate Based Biometric Digital Key Generation with Protection Mechanism

Bio-Inspired Adaboost Method for Efficient Face Recognition

Iris Segmentation and Verification

Determining Optimal Malsburg Gabor Kernel for Efficient Non-Rigid Object Recognition

Evolutionary Classifier Fusion for Optimizing Face Recognition

Canonical View Synthesis for Gait Recognition

Two-level Classifier Scheme for Efficient Eye Location

Fast Parallel Molecular Algorithms for DNA-Based Computation: Solving the Elliptic Curve Discrete Logarithm Problem over GF(2n)

DNA Inspired Digital Signal Pattern Matching Algorithm

An Evolutionary Approach to Speech Quality Estimation

A Destructive Evolutionary Algorithm Process

A New Approach to Calculate the Best Context of a Tree and its Application in Defining a Constructive, Context Aware Crossover for GP

[Seeding Methods for Run Transferable Libraries] Capturing Domain Relevant Functionality through Schematic Manipulation for Genetic Programming

Developmental Evaluation in Genetic Programming: A Position Paper

Overview of Object Detection and Image Analysis by Means of Genetic Programming Techniques

Genetic Algorithm that can Dynamically Change Number of Individuals and Accuracy

Adaptive Classifier Selection System Using Context-driven Genetic Algorithm

Maintaining Diversity in EDAs for Real-Valued Optimisation Problems

Interactive Fuzzy Multi-objective Ant Colony Optimization with Linguistically Quantified Decision Functions for Flexible Job Shop Scheduling Problems

An Efficient Global Optimization of Neural Networks by Using Hybrid Method

Evolution Analysis of Homogenous Source Code and its Application to Plagiarism Detection

NEFRL: A New Neuro-Fuzzy System for Episodic Reinforcement Learning Tasks

Adaptive Data Dissemination in Sensor Networks Using WPDD

Noise-Assisted Control in Information Networks

Molecular Communication A Biochemically-Engineered Communication System

Design of Bio-inspired Fault-tolerant Adaptive Routing Based on Enzymatic Feedback Control in the Cell: Towards Averaging Load Balance in the Network

Leveraging Biologically-inspired Mobile Agents Supporting Composite Needs of Reliability and Timeliness in Sensor Applications

Implementation of an Aquatic Plant Information Bank

Intelligent Navigation of Autonomous Underwater Vehicles for Cage Aquafarm Surveillance

IT Convergence Application System for Eco Aquafarm

Fish Disease Diagnosis System Based on Image Processing of Pathogens' Microscopic Images

Environmental Sensor Data Visualization for Aquafarm Monitoring

Design of Environment Monitoring System for Aquaculture Farms

Computer Simulation Framework for Flatfish Aquaculture

Fish Schooling Behavior Simulator for Cyber Aquarium

Protein Structure Computation

Content Provider	IEEE Xplore Digital Library
Author	Skone, G. Cameron, S.
Copyright Year	2007
Description	Author affiliation: Comput. Lab., Oxford Univ., Oxford (Skone, G.; Cameron, S.)
Abstract	The field of protein structure representation and manipulation has received a great amount of interest during the past fifteen years. Research has come from the biochemical, medical, and physical sciences, in particular for the development of rational drug discovery methods. One of the most significant problems is that of docking: identifying automatically whether two molecules might bind to each other is of central importance to the development of novel medicinal compounds. We present a summary of protein computation principles in the context of an implementation of the well-established FFT docking algorithm.
Starting Page	135
Ending Page	140
File Size	422465
Page Count	6
File Format	PDF
ISBN	9780769529998
DOI	10.1109/FBIT.2007.96
Language	English
Publisher	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Publisher Date	2007-10-11
Publisher Place	South Korea
Access Restriction	Subscribed
Rights Holder	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Subject Keyword	Proteins Drugs Sequences Peptides Spine Hydrogen Humans Amino acids Genetics Biochemistry
Content Type	Text
Resource Type	Article

Central Library (ISO-9001:2015 Certified)
Indian Institute of Technology Kharagpur
Kharagpur, West Bengal, India | PIN - 721302

See location in the Map
03222 282435
Mail: support@ndl.gov.in

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in