NDLI: Inferring gene functions from metabolic reactions

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2013 IEEE International Workshop on Genomic Signal Processing and Statistics

Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS)

Table of contents

Integrative analysis of methylation and gene expression data in TCGA

Hierarchical Bayesian methods for integration of various types of genomics data

Anticancer drug sensitivity analysis: An integrated approach applied to Erlotinib sensitivity prediction in the CCLE database

Integration of multiple data sources for identifying functional modules using Bayesian network

Integrating multi-platform genomic data using hierarchical Bayesian relevance vector machines

Integration of imaging and systems biology to study treatment of medulloblastoma

Fast DNA barcode generating algorithm using Radix Coding method

Design of short barcodes for next generation sequencing of DNA and RNA

A message passing algorithm for reference-guided sequence assembly from high-throughput sequencing data

A comparative study of methods for detecting small somatic variants in disease-normal paired next generation sequencing data

A Bayesian model for SNP discovery based on next-generation sequencing data

Utilizing RNA-Seq data for cancer network inference

Optimal therapeutic methods with random-length response in probabilistic boolean networks

A new phenotypically constrained control policy in boolean networks based on basins of attraction

Combination therapy design for targeted therapeutics from a drug-protein interaction perspective

Genome-wide meta-regression of gene-environment interaction

Feature ranking based on synergy networks to identify prognostic markers in DPT-1

Improving the flexibility of RNA-Seq data analysis pipelines

Accurate identification of significant aberrations in contaminated cancer genome

A comparison of periodicity profile methods for sequence analysis

NMF based approach for finding recurrent aberrations in DNA copy number data

MiB: A comparative assembly processing pipeline

OBGene: Optimal barcode generator for NGS experiments

Determining the relative prevalence of different subpopulations in heterogeneous cancer tissue

Detection and clustering of palindrome in genome sequences by DCT-II method

Cell type specific analysis of human transcriptome data

Comprehensive analyses of tumor suppressor genes in protein-protein interaction networks: A topological perspective

An investigation of clinical outcome prediction from integrative genomic profiles in ovarian cancer

Detection of short exons in DNA sequences using complex wavelet transform of structural features

Multiclass cancer-microarray classification algorithm with pair-against-all redundancy

Sparse Bayesian graphical models for RPPA time course data

A new algorithm for predicting competing endogenous rnas

Logistic principal component analysis for rare variants in gene-environment interaction analysis

A non-parametric approach for estimating stromal contamination in cancer samples

Latent feature decompositions for integrative analysis of diverse high-throughput genomic data

A Bayesian graphical model for integrative analysis of TCGA data

Network-based methods to identify highly discriminating subsets of biomarkers

Information theoretic feature selection for high dimensional metagenomic data

Finding robust pathway markers for cancer classification

A statistical test for intrinsically multivariate predictive genes

Identification of functional genomic regions with copy number alteration in liver cancer

Inferring gene functions from metabolic reactions

Optimal Bayesian classification and its application to gene regulatory networks

Inferring weighted and directed gene interaction networks from gene expression data using the phi-mixing coefficient

Inference of time-varying gene networks using constrained and smoothed Kalman filtering

Determining gene function in boolean networks using boolean satisfiability

External control of probabilistic boolean networks using inhomogeneous Markov chains

Toward exhaustive gating of flow cytometry data

Normalization of LC-MS data using Gaussian process

Robust MS serum sample classification in proteomics by the use of inverse problems

Variability assessment of LC-MS experiments and its application to experimental design and difference detection

An SILAC quantification algorithm for LC-FTMS

An evaluation for merging signaling pathways by using protein-protein interaction data

2011 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS)

2010 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS)

2009 IEEE International Workshop on Genomic Signal Processing and Statistics

2008 IEEE International Workshop on Genomic Signal Processing and Statistics

2007 IEEE International Workshop on Genomic Signal Processing and Statistics

2006 IEEE International Workshop on Genomic Signal Processing and Statistics

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Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in