NDLI: Bioinformatics Services Discovery Using Ontology Classification

Content Provider	IEEE Xplore Digital Library
Author	Menager, H. Lacroix, Z. Tuffery, P.
Copyright Year	2007
Description	Author affiliation: Arizona State Univ., Tempe (Menager, H.; Lacroix, Z.)
Abstract	The number of available bioinformatics resources is overwhelming. The most critical issues met by scientists are (1) to identify the resources suitable to express their protocols, and (2) to compose them in an executable workflow. Many advanced projects offer solutions to the composition of services in a workflow, while others address the interoperability of services. We present an approach that allows the organization of bioinformatics resources in a scientifically meaningful framework that leverages existing effort on interoperability and workflow composition and execution. We present ServiceSemanticMap, a system that allows users to explore the wide availability of bioinformatics resources organized with respect to an ontology. The user interacts with the system through a graph-based interface, discovering the resources by exploring the graph. The system exploits a resource catalog where providers may register their bioinformatics tools through a Web resource entry form. We demonstrate the approach with a semantic map devoted to structural bioinformatics. Our approach is collaborative: a group of experts develop and maintain the ontology, while providers and users may register new resources. The first version of the system is demonstrated on line for structural bioinformatics at http: / /bioserv. rpbs . jussieu . fr/SBMap/'index. html.
Starting Page	106
Ending Page	113
File Size	336007
Page Count	8
File Format	PDF
ISBN	9780769529264
DOI	10.1109/SERVICES.2007.20
Language	English
Publisher	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Publisher Date	2007-07-09
Publisher Place	USA
Access Restriction	Subscribed
Rights Holder	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Subject Keyword	Availability Protocols Web services Collaboration Web pages Ontologies Protein sequence Data mining Bioinformatics Web server
Content Type	Text
Resource Type	Article

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in

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