NDLI: Parallelization and Optimization of Molecular Dynamics Simulation on Many Integrated Core

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2015 11th International Conference on Computational Intelligence and Security (CIS)

2014 Tenth International Conference on Computational Intelligence and Security

2013 Ninth International Conference on Computational Intelligence and Security

2012 Eighth International Conference on Computational Intelligence and Security

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Parallelization and Optimization of Molecular Dynamics Simulation on Many Integrated Core

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2011 Seventh International Conference on Computational Intelligence and Security

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2006 International Conference on Computational Intelligence and Security

Parallelization and Optimization of Molecular Dynamics Simulation on Many Integrated Core

Content Provider	IEEE Xplore Digital Library
Author	Qian Yin Ruiyi Luo Ping Guo
Copyright Year	2012
Abstract	Molecular dynamics (MD) simulations are useful in various areas. In this paper, we parallelize and optimize the grid-based MD algorithm on Many Integrated Core (MIC) Architecture. To get full play of the hardware and accelerate computation of MD simulation, we design the parallel structure using multi-threads with OpenMP. Also, various or method such as Array Notification, intrinsic and so on are used to vectorize the application according to the character of MIC for a higher performance. Due that multi-core is also a trendy of CPU and High Performance Computing, our method can be followed by other similar applications and provide a more choice.
Starting Page	209
Ending Page	213
File Size	321067
Page Count	5
File Format	PDF
ISBN	9781467347259
DOI	10.1109/CIS.2012.54
Language	English
Publisher	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Publisher Date	2012-11-17
Publisher Place	China
Access Restriction	Subscribed
Rights Holder	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Subject Keyword	Algorithm design and analysis vectorlization Microwave integrated circuits multi-threads Molecular Dynamics Instruction sets Force parallel Graphics processing units Many Integrated Core Arrays
Content Type	Text
Resource Type	Article

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