NDLI: Shape control of side effect machines for DNA classification

Content Provider	IEEE Xplore Digital Library
Author	McEachern, A. Ashlock, D.
Copyright Year	2014
Description	Author affiliation: Dept. of Math. & Stat., Univ. of Guelph, Guelph, ON, Canada (McEachern, A.; Ashlock, D.)
Abstract	Side effect machines are augmented finite state machines with counters on each state. They are used to convert DNA or other string data into numerical features. In this study we examine the effect of imposing shapes on side effect machines. When a standard finite state device is programmed with an evolutionary algorithm there is no restriction placed on the transition function. A shape for a population of evolving finite state machines is a restriction on the possible transitions. We demonstrate that choosing a shape with expert knowledge yields improved performance on a supervised classification task. The shapes used are designed, induced from evolved side effect machines, and designed based on features of evolved side effect machines. The best performance was exhibited by a shape induced from an evolved side effect machine.
Starting Page	1
Ending Page	8
File Size	1142727
Page Count	8
File Format	PDF
ISBN	9781479945368
DOI	10.1109/CIBCB.2014.6845519
Language	English
Publisher	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Publisher Date	2014-05-21
Publisher Place	USA
Access Restriction	Subscribed
Rights Holder	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Subject Keyword	Shape DNA Training Sociology Statistics Charge carrier processes Standards
Content Type	Text
Resource Type	Article

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1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
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