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| Content Provider | IEEE Xplore Digital Library |
|---|---|
| Author | Giuliani, A. Di Paola, L. Russo, V. |
| Copyright Year | 2012 |
| Description | Author affiliation: Environment and Health Department, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Roma, Italy (Giuliani, A.) || Complex System & Security Lab, Università CAMPUS Bio-Medico, Via A. del Portillo, 21, 00128 Roma, Italy (Di Paola, L.; Russo, V.) |
| Abstract | Proteomics impact on drug design strongly relies on the availability of fast and efficient tools to analyze protein structures. Within this framework, a promising approach deals with the topological analysis of between-residue contact networks. In this paper, we present SymBio, a tool modelled via two Graphical User Interfaces (GUI), aimed at translating the 3D structure of the target protein, fed in the standard PDB format, into an adjacency list, formatted in a custom fashion (NWB file), that is further transmitted to a Network Analysis Toolkit (NAT), and an adjacency matrix for the dedicated clustering analysis. Both classical network invariants (computed by NAT) and a clustering procedure of the nodes (computed by GUI's), provide potentially relevant topological information at both single residue and entire structure levels. |
| Starting Page | 1 |
| Ending Page | 6 |
| File Size | 556155 |
| Page Count | 6 |
| File Format | |
| ISBN | 9781467320498 |
| ISSN | 10637125 |
| e-ISBN | 9781467320511 |
| DOI | 10.1109/CBMS.2012.6266324 |
| Language | English |
| Publisher | Institute of Electrical and Electronics Engineers, Inc. (IEEE) |
| Publisher Date | 2012-06-20 |
| Publisher Place | Italy |
| Access Restriction | Subscribed |
| Rights Holder | Institute of Electrical and Electronics Engineers, Inc. (IEEE) |
| Subject Keyword | Proteins Graphical user interfaces Software Stability analysis Spectral analysis Periodic structures |
| Content Type | Text |
| Resource Type | Article |
| Subject | Radiology, Nuclear Medicine and Imaging Computer Science Applications |
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