NDLI: Protein Fold Recognition using Residue-Based Alignments of Sequence and Secondary Structure

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2015 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)

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Table of contents

Direction of Arrival Estimation using Eigenanalysis of the Parameterized Spatial Correlation Matrix

Multi-Channel Source Separation Preserving Spatial Information

Primary-Ambient Signal Decomposition and Vector-Based Localization for Spatial Audio Coding and Enhancement

Principles and Analysis of the Squeezing Approach to Low Bit Rate Spatial Audio Coding

Acoustic Echo Cancellation for Surround Sound using Perceptually Motivated Convergence Enhancement

Efficient Conversion of X.Y Surround Sound Content to Binaural Head-Tracked Form for HRTF-Enabled Playback

An Acoustic MIMO Framework for Analyzing Microphone-Array Beamforming

Microphone Array Post-Filter using Incremental Bayes Learning to Track the Spatial Distributions of Speech and Noise

Speech Source Separation by Combining Localization Cues with Mixture Models of Speech Spectra

Source Localization in Reverberant Environments by Consistent Peak Selection

Blind Speech Separation in a Meeting Situation with Maximum SNR Beamformers

Efficient Blind Source Separation Combining Closed-Form Second-Order ICA and Nonclosed-Form Higher-Order ICA

All-Pole Spectral Envelope Modelling with Order Selection for Harmonic Signals

Analysis of Musical Instrument Sounds by Source-Filter-Decay Model

Integration and Adaptation of Harmonic and Inharmonic Models for Separating Polyphonic Musical Signals

Sound Source Tracking and Formation using Normalized Cuts

Blind Signal Decompositions for Automatic Transcription of Polyphonic Music: NMF and K-SVD on the Benchmark

Automating Ornamentation Transcription

Nonlinear Residual Echo Suppression using a Power Filter Model of the Acoustic Echo Path

A New Structure for Combining Echo Cancellation and Beamforming in Changing Acoustical Environments

Multichannel Acoustic Echo Cancellation and Noise Reduction in Reverberant Environments using the Transfer-Function GSC

Acoustic Echo Cancellation using Sub-Adaptive Filter

Variable Regularized Fast Affine Projections

A New Robust Frequency Domain Echo Canceller with Closed-Loop Learning Rate Adaptation

Misalignment Performance of Selective Tap Adaptive Algorithms for System Identification of Time-Varying Unknown Systems

An Analogue Compensation Scheme in Adaptive Active Control System with Significant Secondary Path Variation

Performance Analysis of the Fxlms-Based Narrowband Active Noise Control System with Online Secondary Path Modeling

Nonlinear Active Noise Control for Infant Incubators in Neo-Natal Intensive Care Units

Laplace Entropy and its Application to Time Delay Estimation for Speech Signals

Stepwise Phase Difference Restoration Method for Sound Source Localization using Multiple Microphone Pairs

A Real-Time SRP-PHAT Source Location Implementation using Stochastic Region Contraction(SRC) on a Large-Aperture Microphone Array

Maximum Likelihood Sound Source Localization for Multiple Directional Microphones

Particle Filtering Algorithms for Tracking Multiple Sound Sources using Microphone Arrays

Robust Adaptive Beamforming Algorithm using Instantaneous Direction of Arrival with Enhanced Noise Suppression Capability

The Effect of Calibration Errors on Source Localization with Microphone Arrays

Low Frequency Phase Calibration for a Circular Microphone Array

Blind Source Separation Based on a Beamformer Array and Time Frequency Binary Masking

Permutation-Robust Structure for ICA-Based Blind Source Extraction

Underdetermined Blind Separation of Audio Sources from the Time-Frequency Representation of their Convolutive Mixtures

Recurrent Timing Neural Networks for Joint F0-Localisation Based Speech Separation

A Multilinear (Tensor) Framework for HRTF Analysis and Synthesis

Fast Multipole Accelerated Boundary Elements for Numerical Computation of the Head Related Transfer Function

Efficient Binaural Display using MIMO State-Space Systems

A Joint Minimax Approach for Binaural Rendering of Audio Through Loudspeakers

A Spatially Robust Least Squares Crosstalk Canceller

Robust Crosstalk Cancellation for 3D Sound using Multiple Loudspeakers

A Novel Adaptive Crosstalk Cancellation using Psychoacoustic Model for 3D Audio

An Efficient Multichannel Equalization Algorithm for Audio Applications

Study on Speech Dereverberation with Autocorrelation Codebook

Multivariate LP Based MMSE-ZF Equalizer Design Considerations and Application to Multimicrophone Dereverberation

Stationary-Tones Interference Cancellation using Adaptive Tracking

Audio Segmentation via Tri-Model Bayesian Information Criterion

Unsupervised Audio Segmentation using Extended Baum-Welch Transformations

Discriminating Two Types of Noise Sources using Cortical Representation and Dimension Reduction Technique

Fast and Robust Meter and Tempo Recognition for the Automatic Discrimination of Ballroom Dance Styles

Locating Rhythmic Patterns in Music Recordings using Hidden Markov Models

Query by Example of Audio Signals using Euclidean Distance Between Gaussian Mixture Models

An Adaptive Distance Measure for Similarity Based Playlist Generation

Fingerprinting to Identify Repeated Sound Events in Long-Duration Personal Audio Recordings

Known-Audio Detection using Waveprint: Spectrogram Fingerprinting by Wavelet Hashing

Boosted Binary Audio Fingerprint Based on Spectral Subband Moments

Audio Watermarking using Subband Modulation Spectra

A Parametric Method for Pitch Estimation of Piano Tones

Recursive Least-Squares Estimation of the Evolution of Partials in Sinusoidal Analysis

Quantized Sparse Approximation with Iterative Thresholding for Audio Coding

Accounting for Companding Nonlinearities in Lossless Audio Compression

Wide-Band Perceptual Audio Coding Based on Frequency-Domain Linear Prediction

ADPCM with Adaptive Pre- and Post-Filtering for Delay-Free Audio Coding

An MDCT Domain Frame-Loss Concealment Technique for MPEG Advanced Audio Coding

Perceived Quality of an Audio Signal Impaired by Signal Loss: Psychoacoustic Tests and Prediction Model

Generative Model of Voice in Noise for Structured Coding Applications

On-Line Simulation of 2D Resonators with Reduced Dispersion Error using Compact Implicit Finite Difference Methods

Low Complexity Factorial Pulse Coding of MDCT Coefficients using Approximation of Combinatorial Functions

Adaptive Blood Velocity Estimation in Medical Ultrasound

An Energy-Based Segmentation of Prostate from Ultrasouind Images using Dot-Pattern Select Cells

Gigabytes to Bytes: Automated Denoising and Feature Extraction as Applied to the Analysis of HIV Architecture and Variability using Electron Tomography

Local Linear Discriminant Analysis (LLDA) for Inference of Multisubject FMRI Data

NMF on Positron Emission Tomography

Quality Measures for Decompressed Medical Images: Statistics, Observers, and ROCs

MEG Signal Denoising Based on Time-Shift PCA

A True Spatio-Temporal Test Statistic for Activation Detection in FMRI by Parametric Cepstrum

Spatial Mixture Modelling for the Joint Detection-Estimation of Brain Activity in fMRI

Fundamental Detection and Estimation Limits in Spike Sorting

Blind Separation of Human Heartbeats and Breathing by the use of a Doppler Radar Remote Sensing

Feature Selection Based on Fisher Ratio and Mutual Information Analyses for Robust Brain Computer Interface

Group-Biomarkers Identification in Ovarian Carcinoma

Fast Search of Sequences with Complex Symbol Correlations using Profile Context-Sensitive HMMS and Pre-Screening Filters

Protein Fold Recognition using Residue-Based Alignments of Sequence and Secondary Structure

Wavelet Footprints and Sparse Bayesian Learning for DNA Copy Number Change Analysis

Reconstruction of Genetic Regulatory Networks Based on the Posterior Probabilities of Gene Regulations

High Performance Biosequence Database Scanning using FPGAs

Toward Turbo Decoding of RNA Secondary Structure

Near-Lossless Compression of Mass Spectra for Proteomics

Genomic Network Tomography

Evolutionary Sequence Modeling for Discovery of Peptide Hormones

Phonovibrography: The Fingerprint of Vocal Fold Vibrations

A Self-Training Semi-Supervised Support Vector Machine Algorithm and its Applications in Brain Computer Interface

Relevance Network Modeling for Muscle Association Pattern in Reaching Movements

A Simple and Fast Algorithm for Automatic Suppression of High-Amplitude Artifacts in EEG Data

Prototypical Biological Signals

Real-Time Molecular Detectors using Gramicidin Ion Channel Nano-Biosensors

Auscultatory Blood Pressure Measurement using HMMs

Synchronous Detection of Emboli by wavelet packet decomposition

Similarity Analysis of Time Series Gene Expression using Dual-Tree Wavelet Transform

ML Estimation of DNA Initial Copy Number in Polymerase Chain Reaction (PCR) Processes

Fast Line-Based Imaging of Small Sample Features

A New Technique for High-Resolution Frequency Domain Optical Coherence Tomography

A Multi-Subject, Dynamic Bayesian Networks (DBNS) Framework for Brain Effective Connectivity

Image-Based Frame Gating of IVUS Pullbacks: A Surrogate for ECG

False Positive Reduction in Lung GGO Nodule Detection with 3D Volume Shape Descriptor

Automatic Motion Feature Extraction with Application to Quantitative Assessment of Facial Paralysis

Quality Assessment of Non-Rigid Registration Methods for Atlas-Based Segmentation in Head-Neck Radiotherapy

Enhanced Multi-Level Thresholding Segmentation and Rank Based Region Selection for Detection of Masses in Mammograms

Lung Segmentation in Pulmonary CT Images using Wavelet Transform

Markov Random Field Energy Minimization via Iterated Cross Entropy with Partition Strategy

3D Mixed Invariant and its Application on Object Classification

Exploiting Vertical Lines in Vision-Based Navigation for Mobile Robot Platforms

All-Clear Image Based Synthesis using Clarity Degree

Real Time 3D Avatar Transmission using Cylinder Mapping

Contrast-Invariant Feature Point Correspondence

Multiple View Region Matching as a Lagrangian Optimization Problem

Face Sketch Synthesis using E-HMM and Selective Ensemble

A Pose Robust Multi-View Face Recognition System using Plane of Pose Tolerance

Person Recognition Form Video using Facial Mimics

Discriminant Graph Structures for Face Verification

Adaptive Weight Estimation in Multi-Biometric Verification using Fuzzy Logic Decision Fusion

Analyzing Facial Images using Empirical Mode Decomposition for Illumination Artifact Removal and Improved Face Recognition

Hash-Based Motion Modeling in Wyner-Ziv Video Coding

Uniform Scalar Quantization Based Wyner-Ziv Coding of Laplace-Markov Source

Distributed Coding of Shifts using the DFT Phase

Rate Allocation Algorithm for Pixel-Domain Distributed Video Coding Without Feedback Channel

Block-Adaptive Wyner-Ziv Coding for Transform-Domain Distributed Video Coding

Robust Matched Filters for Target Detection in Hyperspectral Imaging Data

Wideband Array Imaging of a Target Situated in an Unknown Random Media

Bistatic Synthetic Aperture Hitchhiker Imaging

Inversion of Circular Averages using the Funk Transform

Detecting Curved Underground Tunnels using Partial Radon Transforms

Oversampled Inverse Complex Lapped Transform Optimization

Kernel Resolution Synthesis for Superresolution

Multiframe Super-Resolution Reconstruction Based on Cycle-Spinning

Joint Image Registration and Super-Resolution using Nonlinear Least Squares Method

Robust Image Fusion for Image Stabilization

Are Registration Errors Always Bad for Super-Resolution?

Breaking the Limitation of Manifold Analysis for Super-Resolution of Facial Images

A Novel Decomposition Scheme for Image De-Noising

Joint Estimation of Multiplicative and Impulsive Noise Parameters in Remote Sensing Images with Fractal Structure

Wavelet Image Denoising Based on Improved Thresholding Neural Network and Cycle Spinning

Morphological Diversity and Sparse Image Denoising

Image Denoising by Pointwise Thresholding of the Undecimated Wavelet Coefficients: A Global Sure Optimum

A Framework for wavelet-Based Analysis and Processing of Color Filter Array Images with Applications to Denoising and Demosaicing

Discriminative Gaussian Mixtures for Interactive Image Segmentation

A New Image Thresholding Method Based on Graph Cuts

Image Segmentation using Invariant Texture Features from the Double Dyadic Dual-Tree Complex Wavelet Transform

Image Segmentation Algorithm using Watershed Transform and Level Set Method

Automatic Extraction of Salient Objects using Feature Maps

Array Processing Approach for Object Segmentation in Images

An Automatic Facial Expression Recognition Approach Based on Confusion-Crossed Support Vector Machine Tree

Exploring Feature Descritors for Face Recognition

Block Size Forensic Analysis in Digital Images

Rotation Invariance in Images

Importance of Feature Locations in Bag-of-Words Image Classification

Statistical Analysis of the Global Geodesic Function for 3D Object Classification

Improved Interlayer Prediction for Scalable Video Coding

Backward Drift Estimation with Application to Quality Layer Assignment in H.264/AVC Based Scalable Video Coding

Geometry-Adaptive Block Partitioning for Video Coding

Adaptive Filtering for Video Coding with Focus Change

A New Bidirectionally Motion-Compensated Orthogonal Transform for Video Coding

Long Term Selection of Reference Frame Sub-Blocks using MPEG-7 Indexing Metadata

Recursive Motion Estimation of Range Image

Motion and Region Detection for Effective Recursive Temporal Noise Reduction

A Fast and Robust Solution to the Five-Pint Relative Pose Problem using Gauss-Newton Optimization on a Manifold

Exploiting Multi-Fractal and Chaotic Phenomena of Motion in Image Sequences: Foundations

Fast Reliable Multi-Scale Motion Region Detection in Video Processing

Markerless Monocular Tracking of Articulated Human Motion

Adaptive Reconstruction Method of Missing Texture Based on Projection Onto Convex Sets

Structure and Texture Image Inpainting Based on Region Segmentation

An Effective Postprocessing Method for Lowbit Rate Block DCT Coded Images

Stabilized Anisotropic Diffusions

Prior Model for the MRF Modeling of Multi-Channel Images

Nonlinear Bistable Stochastic Resonance Filters for Image Processing

Wavelet-Based Despeckling of Medical Ultrasound Images with the Symmetric Normal Inverse Gaussian Prior

Spatial Error Concealment Technique using Verge Points

Human Visual System Based Multi-Histogram Equalization for Non-Uniform Illumination and Shoadow Correction

Training-Based Color Correction for Camera Phone Images

Bar Code Recognition in Highly Distorted and Low Resolution Images

A Robust Image Super-Resolution Scheme Based on Redescending M-Estimators and Information-Theoretic Divergence

Fast Computation of the High Resolution Image Restoration by using the Discrete Cosine Transform

A Minimum Mean Square Error Estimation and Mixture-Based Approach to Packet Video Error Concealment

POCS-Based Restoration of Bayer-Sampled Image Sequences

Super Resolution Approaches for Photometrically Diverse Image Sequences

Adaptive Spatio-Temporal Video Noise Filtering for High Quality Applications

Combinedwavelet Domain and Motion Compensated Filtering Compliant with Video Codecs

Simple and Fast All-in-Focus Image Reconstruction Based on Three-Dimensional/Two-Dimensional Transform and Filtering

Suppression of Mosquito Noise by Recursive Epsilon-Filters

A Spherical Rectification for Dual-PTZ-Camera System

An Unsupervised Algorithm to Extract Face Texture from Video

An Affine Invariant Function using PCA Bases with an Application to Within-Class Object Recognition

Correlated Probabilistic Label Propagation for Region-Based Image Retrieval

Generating Optimal Face Image in Face Recognition System

Simulation and Analysis of Human Walking Motion

The Biosecure Geometry-Based System for Hand Modality

Image Denoising Employing a Mixture of Circular Symmetric Laplacian Models with Local Parameters in Complex Wavelet Domain

Distance Measurement from Single Image Based on Circles

Coarse-to-Fine Event Model for Human Activities

QOS Mapping using Human Factors for Fine Granular Scalability

Channel-Aware Rate Adaptation for Energy Optimization and Congestion Avoidance

A Flexible Video Transmission System Based on JPEG 2000 Conditional Replenishment with Multiple References

Expected Run-Time Distortion Based Scheduling for Scalable Video Transmission with Hybrid FEC/ARQ Error Control

Watermarking and Streaming Compressed Video

Hybrid End-to-End Distortion Estimation and its Application in Error Resilient Video Coding

Optimal Mode Selection and Channel Coding for Video Transmission Over Wireless Channels using H.264/AVC

A Joint Packet Selection/Omission and FEC System for Streaming Video

Transmission of Scalable H.264 Coded Video Over Wireless MIMO Systems with Optimal Bandwidth Allocation

Content-Aware Resource Allocation for Scalable Video Transmission to Multiple Users Over a Wireless Network

An Adaptive Algorithm for Sampling Two-Dimensional Fields using Mobile Sensors

Extending the Depth of Field in Microscopy Through Curvelet-Based Frequency-Adaptive Image Fusion

Colour Filter Array Demosaicking using Cubic Spline Interpolation

A Structural Similarity Metric for Video Based on Motion Models

Using Structural Similarity Quality Metrics to Evaluate Image Compression Techniques

Clustering Polarimetric SAR Image Under Deorientation Theory

Signal Properties of Squint Mode Bistatic SAR

Confined Error Diffusion Algorithms for Display Device

Video Quality Metrics - An Analysis for Low Bit Rate Videos

Depth Detection of Light Field

Object Tracking by Finite-State Markov Process

Kernel-Based Spatial-Color Modeling for Fast Moving Object Tracking

Speeded Up Gradient Vector Flow B-Spline Active Contours for Robust and Real-Time Tracking

Robust Multi-Camera 3D People Tracking with Partial Occlusion Handling

Multi-Person 3D Tracking with Particle Filters on Voxels

Automatic Human Body Tracking and Modeling from Monocular Video Sequences

Multiple-Target Tracking for Crossroad Traffic Utilizing Modified Probabilistic Data Association

Online Real Boosting for Object Tracking Under Severe Appearance Changes and Occlusion

Particle Filter with Mode Tracker(PF-MT) for Visual Tracking Across Illumination Change

Object Tracking using Incremental 2D-PCA Learning and ML Estimation

Robust Object Tracking with Radial Basis Function Networks

Dual Camera Zoom Control: A Study of Zoom Tracking Stability

A Radial Basis Function and Semantic Learning Space Based Composite Learning Approach to Image Retrieval

Context-Based Concept Fusion with Boosted Conditional Random Fields

Spatial Color Image Databases Summarization

An Interactive Video Annotation Frameowrk with Multiple Modalities

Search Result Clustering Based Relevance Feedback for Web Image Retrival

Integrating Relevance Feedback in Boosting for Content-Based Image Retrieval

A Content-Adaptive Multi-View Video Color Correction Algorithm

On Real-Time Detecting Duplicate Web Videos

Outlier Detection from Pooled Data for Image Retrieval System Evaluation

Exploiting Concept Association to Boost Multimedia Semantic Concept Detection

Two-Dimensional Adaptive Discriminant Analysis

Temporal Modeling of Slide Change in Presentation Videos

A Novel Scalable Texture Video Coding Scheme with GPCA

Antialiasing Scalable Video with a Modulated Lifting Structure

A Robust Method of Determining Context-Coder Solutions for Encoding Affine Motion Vectors

An Efficient Implementation of Unrestricted Motion Compensation in Video Encoder

Video Segmentation and Compression using Hierarchies of Gaussian Mixture Models

Adaptive Interpolation Filter with Flexible Symmetry for Coding High Resolution High Quality Video

Optical Flow Approximation of Sub-Pixel Accurate Block Matching for Video Coding

One-Dimensional Mappings for Recovering Large Scale Projective Transformations

Signed Binary Digit Representation to Simplify 3D-EZW

Fast Template Matching by Applying Winner-Update on Walsh-Hadamard Domain

ICA-Based Algorithms Applied to Image Coding

Multi-View Images Coding Based on Multiterminal Source Coding

Highly Efficient VQ-Based Normal Map Compression using Quality Estimation Model

Rate Allocation Between Views in Scalable Stereo Video Coding using an Objective Stereo Video Quality Measure

Raw Image Encoding Based on Polynomial Approximation

Merge Coding of Atoms for Wavelet/Matching Pursuits Image Compression

Bit-Plane Analysis and Contexts Combining of JPEG2000 Contexts for On-Board Satellite Image Compression

Colour Volumetric Compression for Realistic View Synthesis Applications

Spatiotemporal Algorithm for Background Subtraction

An Improved Spatiogram Similarity Measure for Robust Object Localisation

Fast Visual Tracking using Motion Saliency in Video

Hierarchical Partition-Based Representations for Image Sequences using Trajectory Merging Criteria

Probabilistic Spatio-Temporal Video Object Segmentation using a Priori Shape Descriptor

Shot Classification of Basketball Videos and its Application in Shooting Position Extraction

A Color-Based Gray-Level Compensation Algorithm for Fast Change Detection

QR Decomposition-Based Algorithm for Background Subtraction

Physics-Based Ball Tracking in Volleyball Videos with its Applications to Set Type Recognition and Action Detection

Particle PHD Filtering for Multi-Target Visual Tracking

Directional Discrete Cosine Transforms: A Theoretical Analysis

Low Complexity Fixed-Point Approximation of Inverse Discrete Cosine Transform

An 8×8 IEEE-Compliant Lifting-Based Multiplierless IDCT Structure and Algorithm

Flicker Suppression in JPEG2000 using Segmentation-Based Adjustment of Block Truncation Lengths

Comparison Between H.264/AVC and JPEG2000 Arithmetic Encoders

Subjective Quality Evaluation of Decoded Video in the Presence of Packet Losses

Efficient Chrominance Compensation for MPEG2 to H.264 Transcoding

Hybrid Variable Length Coding for Image and Video Compression

Fast Mode Decision for H.264 Based on Rate-Distortion Cost Estimation

Gaussian Model Based Approach to Reducing DCT Computations in H.264

Adaptive Decoder Complexity Reduction for Coarse Granular Scalability

A Rate-Distortion Optimization Algorithm for Rate Control in H.264

A Rate Control Algorithm for Low-Delay H.264 Video Coding with Stored-B Pictures

A Fast Rate-Distortion Optimization Algorithm for H.264/AVC

A Novel Rate-Quantization Source Modeling Framework for H.264/AVC

A New Rotation Search for Dependent Rate-Distortion Optimization in Video Coding

Advanced Macro-block Entropy Coding in H.264

On Adaptive Pattern Selection for Block Motion Estimation Algorithms

Adaptive Multi-Pattern Fast Block-Matching Algorithm Based on Motion Classification Techniques

Adaptive Multi-Reference Downhill Simplex Search Based on Spatial-Temporal Motion Smoothness Criterion

SIFME: A Single Iteration Fractional-Pel Motion Estimation Algorithm and Architecture for HDTV Sized H.264 Video Coding

Very Fast Global Motion Estimation using Partial Data

Affine Prediction as a Post Processing Stage

Detecting and Tracking Moving Objects in Sequences of Color Images

Adaptive Foreground Object Extraction for Real-Time Video Surveillance with Lighting Variations

Fire Pixel Classification using Fuzzy Logic and Statistical Color Model

A Hierarchical Finite-State Model for Texture Segmentation

Multiscale Color-Texture Image Segmentation with Adaptive Region Merging

Automatic Segmentation of Abnormal Lung Parenchyma Utilizing Wavelet Transform

Texture Classification by using Advanced Local Binary Patterns and Spatial Distribution of Dominant Patterns

Detection of Curvilinear Objects in Noisy Image using Feature-Adapted Beamlet Transform

Detecting People in Images: An Edge Density Approach

An Affine Resilient Curvature Scale-Space Corner Detector

DCT Sign-Only Correlation with Application to Image Matching and the Relationship with Phase-Only Correlation

Image PCA: A New Approach for Face Recognition

Eigentongue Feature Extraction for an Ultrasound-Based Silent Speech Interface

An Artificial Neural Network for Quality Assessment in Wireless Imaging Based on Extraction of Structural Information

Multiscale Corner Detection of Gray Level Images Based on Log-Gabor Wavelet Transform

Generalized Low Dimensional Feature Subspace for Robust Face Recognition on Unseen datasets using Kernel Correlation Feature Analysis

On Geometric and Photometric Registration of Images

Automatically Discovering Unknown Short Video Repeats

2006 IEEE International Conference on Acoustics Speech and Signal Processing Proceedings

Proceedings. (ICASSP '05). IEEE International Conference on Acoustics, Speech, and Signal Processing, 2005.

2004 IEEE International Conference on Acoustics, Speech, and Signal Processing

2003 IEEE International Conference on Acoustics, Speech, and Signal Processing, 2003. Proceedings. (ICASSP '03).

2002 IEEE International Conference on Acoustics, Speech, and Signal Processing

2001 IEEE International Conference on Acoustics, Speech, and Signal Processing. Proceedings (Cat. No.01CH37221)

2000 IEEE International Conference on Acoustics, Speech, and Signal Processing. Proceedings (Cat. No.00CH37100)

1999 IEEE International Conference on Acoustics, Speech, and Signal Processing. Proceedings. ICASSP99 (Cat. No.99CH36258)

Proceedings of the 1998 IEEE International Conference on Acoustics, Speech and Signal Processing, ICASSP '98 (Cat. No.98CH36181)

1997 IEEE International Conference on Acoustics, Speech, and Signal Processing

1996 IEEE International Conference on Acoustics, Speech, and Signal Processing Conference Proceedings

1995 International Conference on Acoustics, Speech, and Signal Processing

Proceedings of ICASSP '94. IEEE International Conference on Acoustics, Speech and Signal Processing

1993 IEEE International Conference on Acoustics, Speech, and Signal Processing

[Proceedings] ICASSP-92: 1992 IEEE International Conference on Acoustics, Speech, and Signal Processing

[Proceedings] ICASSP 91: 1991 International Conference on Acoustics, Speech, and Signal Processing

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Protein Fold Recognition using Residue-Based Alignments of Sequence and Secondary Structure

Content Provider	IEEE Xplore Digital Library
Author	Aydin, Z. Erdogan, H. Altunbasak, Y.
Copyright Year	2007
Description	Author affiliation: Center for Signal & Image Process., Georgia Inst. of Technol., Atlanta, GA (Aydin, Z.)
Abstract	Protein structure prediction aims to determine the three-dimensional structure of proteins form their amino acid sequences. When a protein does not have similarity (homology) to any known fold, threading or fold recognition methods are used to predict structure. Fold recognition methods frequently employ secondary structure, solvent accessibility, and evolutionary information to enhance the accuracy and the quality of the predictions. In this paper, we present a residue based alignment method as an alternative to the state-of-the-art SSEA method, originally introduced by Przytycka et al., and further modified by McGuffin et al. We introduce a residue-based score function, which can incorporate amino acid similarity matrices such as BLOSUM into secondary structure similarity scoring and compute joint alignments. We show that the power of the SSEA method comes from the length normalization instead of the element alignment technique and similar performance can be achieved using residue-based alignments of secondary structures by optimizing gap costs. In simulations with the two benchmark datasets, our method performs slightly better than the SSEA in terms of the fold recognition accuracy. When the secondary structure similarity matrix is combined with the amino acid based BLOSUM30 matrix, the accuracy of our method improves further (4% for the McGuffin set and 10% for the Ding and Dubchak set). The availability of aligning the amino acid and secondary structure sequences in a joint manner offers a better starting point for more elaborate techniques that employ profile-profile alignments and machine learning methods.
File Size	5104973
File Format	PDF
ISBN	1424407273
ISSN	15206149
DOI	10.1109/ICASSP.2007.366688
Language	English
Publisher	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Publisher Date	2007-04-15
Publisher Place	USA
Access Restriction	Subscribed
Rights Holder	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Subject Keyword	Amino acids Protein engineering Learning systems Target recognition Libraries Image recognition Signal processing Image processing Solvents Optimization methods gap cost protein fold recognition secondary structure alignment amino acid alignment score normalization
Content Type	Text
Resource Type	Article

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