NDLI: Forensic efficiencies of individual identification, kinship testing and ancestral inference in three Yunnan groups based on a self-developed multiple DIP panel

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Year: 2023 Month: August Volume: 14

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Spectrum of germline and somatic mitochondrial DNA variants in Tuberous Sclerosis Complex

Genome-wide association study finds multiple loci associated with intraocular pressure in HS rats

Detailed genetic and clinical analysis of a novel de novo variant in HPRT1: Case report of a female patient from Saudi Arabia with Lesch–Nyhan syndrome

A spectrum of clinical severity of recessive titinopathies in prenatal

Identification of microtubule-associated biomarkers in diffuse large B-cell lymphoma and prognosis prediction

Uganda chicken genetic resources: I. phenotypic and production characteristics

The computational implementation of a platform of relative identity-by-descent scores algorithm for introgressive mapping

Apomixis for no bacteria-induced thelytoky in Diglyphus wani (Hymenoptera: Eulophidae)

Genetic association of wool quality characteristics in United States Rambouillet sheep

Screening potential lncRNA biomarkers for breast cancer and colorectal cancer combining random walk and logistic matrix factorization

Comparisons of short-term and long-term results between laparoscopic between open pancreaticoduodenectomy for pancreatic tumors: A systematic review and meta-analysis

PGAGP: Predicting pathogenic genes based on adaptive network embedding algorithm

The new oncogene transmembrane protein 60 is a potential therapeutic target in glioma

ABI3BP is a prognosis biomarker related with clinicopathological features and immunity infiltration of lung tumor

A rare case report of waldenström macroglobulinemia converted to serum low IgM

Draft genome assembly for the colombian freshwater bocachico fish, Prochilodus magdalenae

Identification of miRNA-mediated gene regulatory networks in L-methionine exposure counteracts cocaine-conditioned place preference in mice

Investigating nicotine pathway-related long non-coding RNAs in tobacco

RNA modification writers pattern in relation to tumor microenvironment and prognosis in prostate cancer

A shortest path-based approach for copy number variation detection from next-generation sequencing data

Identification of a dysfunctional exon-skipping splice variant in GLUT9/SLC2A9 causal for renal hypouricemia type 2

Biochemical exploration of β-lactamase inhibitors

Case report: A novel de novo loss of function variant in the DNA-binding domain of TBX2 causes severe osteochondrodysplasia

Genome-wide association mapping of bread wheat genotypes using yield and grain morphology-related traits under different environments

Preclinical species gene expression database: Development and meta-analysis

A systems level approach to study metabolic networks in prokaryotes with the aromatic amino acid biosynthesis pathway

Integrative analysis of WDR12 as a potential prognostic and immunological biomarker in multiple human tumors

LncRNAs could play a vital role in osteosarcoma treatment: Inhibiting osteosarcoma progression and improving chemotherapy resistance

Candidate targets of copy number deletion events across 17 cancer types

The role of smoking and alcohol in mediating the effect of gastroesophageal reflux disease on lung cancer: A Mendelian randomization study

Corrigendum: Transmembrane and coiled-coil domains 3 is a diagnostic biomarker for predicting immune checkpoint blockade efficacy in hepatocellular carcinoma

Addressing disparities in pharmacogenomics through rural and underserved workforce education

Performance of expanded non-invasive prenatal testing for fetal aneuploidies and copy number variations: A prospective study from a single center in Jiangxi province, China

Distinct traces of mixed ancestry in western commercial pig genomes following gene flow from Chinese indigenous breeds

Biological gene extraction path based on knowledge graph and natural language processing

Exploring perceptions, knowledge, and attitudes regarding pharmacogenetic testing in the medically underserved

Prenatal diagnosis of recurrent moderate skeletal dysplasias in lamin B receptors

Chronic granulomatous disease associated with Duchenne muscular dystrophy caused by Xp21.1 contiguous gene deletion syndrome: Case report and literature review

Interferon gamma-related gene signature based on anti-tumor immunity predicts glioma patient prognosis

Relationship between serum TGF- β 1, MMP-9 and IL-1β and pathological features and prognosis in breast cancer

Identification of genes involved in chicken follicle selection by ONT sequencing on granulosa cells

Identification of two molecular subtypes and a novel prognostic model of lung adenocarcinoma based on a cuproptosis-associated gene signature

Combining methods for non-invasive fecal DNA enables whole genome and metagenomic analyses in wildlife biology

Transcriptome analysis and gene expression analysis related to salinity-alkalinity and low temperature adaptation of Triplophysa yarkandensis

Whole-genome resequencing and bisulfite sequencing provide new insights into the feeding habit domestication in mandarin fish (Siniperca chuatsi)

Functional gene polymorphisms and expression alteration of selected microRNAs and the risk of various gastric lesions in Helicobacter pylori-related gastric diseases

LGALS1 was related to the prognosis of clear cell renal cell carcinoma identified by weighted correlation gene network analysis combined with differential gene expression analysis

Molecular characterization of divergent isolates of Citrus bent leaf viroid (CBLVd) from citrus cultivars of Punjab, Pakistan

Exploring the role of tumor stemness and the potential of stemness-related risk model in the prognosis of intrahepatic cholangiocarcinoma

Clinical and molecular significance of the RNA m6A methyltransferase complex in prostate cancer

Mitochondrial genome characteristics and phylogenetic analysis of the medicinal and edible plant Mesona chinensis Benth

Development of multi-level standards of care recommendations for sickle cell disease: Experience from SickleInAfrica

miRdisNET: Discovering microRNA biomarkers that are associated with diseases utilizing biological knowledge-based machine learning

Development and validation of a genomic instability-related lncRNA prognostic model for hepatocellular carcinoma

Targeted next-generation sequencing for genetic variants of left ventricular mass status among community-based adults in Taiwan

DNA methylation signature of psychological resilience in young adults: Constructing a methylation risk score using a machine learning method

Leukoencephalopathy hypomyelination with brainstem and spinal cord involvement and leg spasticity caused by DARS1 mutations

Triple negative breast cancer: Immunogenicity, tumor microenvironment, and immunotherapy

Individual effects of GSTM1 and GSTT1 polymorphisms on cervical or ovarian cancer risk: An updated meta-analysis

Exploring the prognostic value of HK3 and its association with immune infiltration in glioblastoma multiforme

Genetic variation in TBC1 domain family member 1 gene associates with the risk of lean NAFLD via high-density lipoprotein

Editorial: RNA-chromatin interactions: Biology, mechanism, disease and therapeutics

A cellular senescence-related genes model allows for prognosis and treatment stratification of hepatocellular carcinoma: A bioinformatics analysis and experimental verification

Editorial: Genomic selection and characterization in cereals

Genome-wide DNA methylation profiling in chronic lymphocytic leukaemia

Expression of miR-320 and miR-204 in myocardial infarction and correlation with prognosis and degree of heart failure

Governing biotechnology to provide safety and security and address ethical, legal, and social implications

Integrated transcriptome and network analysis identifies EZH2/CCNB1/PPARG as prognostic factors in breast cancer

Genome-wide association study in a rat model of temperament identifies multiple loci for exploratory locomotion and anxiety-like traits

Cell death-related biomarker SLC2A1 has a significant role in prognosis prediction and immunotherapy efficacy evaluation in pan-cancer

Unraveling signatures of chicken genetic diversity and divergent selection in breed-specific patterns of early myogenesis, nitric oxide metabolism and post-hatch growth

Placental circadian lincRNAs and spontaneous preterm birth

A statistical boosting framework for polygenic risk scores based on large-scale genotype data

Transcriptome-wide analysis reveals the molecular mechanisms of cannabinoid type II receptor agonists in cardiac injury induced by chronic psychological stress

Democratizing clinical-genomic data: How federated platforms can promote benefits sharing in genomics

Transcriptome profiling of two contrasting pigeon pea (Cajanus cajan) genotypes in response to waterlogging stress

Editorial: Molecular basis of epigenetic regulation in cancer therapies

The power of geohistorical boundaries for modeling the genetic background of human populations: The case of the rural catalan Pyrenees

Simultaneous detection of G6PD mutations using SNPscan in a multiethnic minority area of Southwestern China

A complex heterozygous mutation in PADI6 causes early embryo arrest: A case report

A novel non-sense variant in the OFD1 gene caused Joubert syndrome

A novel 9-gene signature for the prediction of postoperative recurrence in stage II/III colorectal cancer

Editorial: Application in evolutionary novelties and diversities: Medicine, agriculture, and conservation

Multi-omics analysis revealed the role of CCT2 in the induction of autophagy in Alzheimer’s disease

Case report: Infantile generalized pustular psoriasis with IL36RN and CARD14 gene mutations

The position of the longest intron is related to biological functions in some human genes

Transcriptomics and metabolomics reveal tolerance new mechanism of rice roots to Al stress

Genome-wide identification and analysis of the NLR gene family in Medicago ruthenica

A five-pseudouridylation-associated-LncRNA classifier for primary prostate cancer prognosis prediction

The gene signature of tertiary lymphoid structures within ovarian cancer predicts the prognosis and immunotherapy benefit

Comparative transcriptomics in alternate bearing cultivar Dashehari reveals the genetic model of flowering in mango

Editorial: Implementation of genomic medicine in Africa: One continent, one vision

Identification and validation of a TTN-associated immune prognostic model for skin cutaneous melanoma

Chromosome genome assembly for the meagre, Argyrosomus regius, reveals species adaptations and sciaenid sex-related locus evolution

Genome-wide identification of acyl-CoA binding proteins and possible functional prediction in legumes

Computational approaches for discovering significant microRNAs, microRNA-mRNA regulatory pathways, and therapeutic protein targets in endometrial cancer

Novel immune-related prognostic model and nomogram for breast cancer based on ssGSEA

Epigenetic modifications in esophageal cancer: An evolving biomarker

Damage mapping techniques and the light they have shed on canonical and atypical UV photoproducts

Whole-genome resequencing reveals genetic diversity, differentiation, and selection signatures of yak breeds/populations in Qinghai, China

Uncovering the molecular mechanisms between heart failure and end-stage renal disease via a bioinformatics study

Identification of molecular subtypes and a prognostic signature based on chromatin regulators related genes in prostate cancer

Editorial: Chromosomal fragile sites, genome instability and human diseases

Clinical impact of exome sequencing in the setting of a general pediatric ward for hospitalized children with suspected genetic disorders

A novel frameshift mutation in TRPV6 is associated with hereditary pancreatitis

Case report: 7p22.3 deletion and 8q24.3 duplication in a patient with epilepsy and psychomotor delay—Does both possibly act to modulate a candidate gene region for the patient’s phenotype?

P53 protein and the diseases in central nervous system

DNA methylation and mRNA expression of glutathione S-transferase alpha 4 are associated with intracranial aneurysms in a gender-dependent manner

Cuproptosis-associated CDKN2A is targeted by plicamycin to regulate the microenvironment in patients with head and neck squamous cell carcinoma

The role of serine metabolism in lung cancer: From oncogenesis to tumor treatment

Multi-view graph convolutional network for cancer cell-specific synthetic lethality prediction

Case report: Osteo-oto-hepato-enteric syndrome caused by UNC45A deficiency

Comprehensive analysis of PTPN family expression and prognosis in acute myeloid leukemia

The frequency of somatic mutations in cancer predicts the phenotypic relevance of germline mutations

Identification of COL4A4 variants in Chinese patients with familial hematuria

PBRM1 mutation as a predictive biomarker for immunotherapy in multiple cancers

The host genetics affects gut microbiome diversity in Chinese depressed patients

A nuclear target sequence capture probe set for phylogeny reconstruction of the charismatic plant family Bignoniaceae

The impact of decreased expression of SVEP1 on abnormal neovascularization and poor prognosis in patients with intrahepatic cholangiocarcinoma

Novel candidate genes for cholesteatoma in chronic otitis media

In-depth analysis of large-scale screening of WRKY members based on genome-wide identification

Pan-cancer analysis identifies proteasome 26S subunit, ATPase (PSMC) family genes, and related signatures associated with prognosis, immune profile, and therapeutic response in lung adenocarcinoma

Analysis of genetic diversity and selection characteristics using the whole genome sequencing data of five buffaloes, including Xilin buffalo, in Guangxi, China

A novel prognostic gene set for colon adenocarcinoma relative to the tumor microenvironment, chemotherapy, and immune therapy

Single-cell RNA sequencing reveals intratumoral heterogeneity and potential mechanisms of malignant progression in prostate cancer with perineural invasion

Revitalization of small millets for nutritional and food security by advanced genetics and genomics approaches

Detection of genomic regions that differentiate Bos indicus from Bos taurus ancestral breeds for milk yield in Indian crossbred cows

Identification and validation of immune cells and hub genes alterations in recurrent implantation failure: A GEO data mining study

Prognostic significance of CKAP2L expression in patients with clear cell renal cell carcinoma

Machine learning in the estimation of CRISPR-Cas9 cleavage sites for plant system

Low expression of NR1H3 correlates with macrophage infiltration and indicates worse survival in breast cancer

Epigenetic modifications in chronic rhinosinusitis with and without nasal polyps

Regulation of autophagy, lipid metabolism, and neurodegenerative pathology by heparan sulfate proteoglycans

Immune infiltration and a necroptosis-related gene signature for predicting the prognosis of patients with cervical cancer

Circular RNAs in extracellular vesicles: Promising candidate biomarkers for schizophrenia

Diagnostic application of exome sequencing in Chinese children with suspected inherited kidney diseases

Genome-wide identification and characterization of toll-like receptor 5 (TLR5) in fishes

A potential three-gene-based diagnostic signature for idiopathic pulmonary fibrosis

Exploration of comorbidity mechanisms and potential therapeutic targets of rheumatoid arthritis and pigmented villonodular synovitis using machine learning and bioinformatics analysis

Liquid biopsy in pediatric brain tumors

Transcriptomic analysis of the upper lip and primary palate development in mice

Identification and experimental validation of key m6A modification regulators as potential biomarkers of osteoporosis

High expression of KNL1 in prostate adenocarcinoma is associated with poor prognosis and immune infiltration

Transcriptomic data analysis coupled with copy number aberrations reveals a blood-based 17-gene signature for diagnosis and prognosis of patients with colorectal cancer

A prognostic model based on clusters of molecules related to epithelial–mesenchymal transition for idiopathic pulmonary fibrosis

The role of landscape evolution in the genetic diversification of a stream fish Sarcocheilichthys parvus from Southern China

Positive regulation of innate immune response by miRNA-let-7a-5p

Smoking, alcohol consumption, diabetes, body mass index, and peptic ulcer risk: A two-sample Mendelian randomization study

Editorial: Genomic alteration landscapes of aging, metabolic disorders, and cancer: Emerging overlaps and clinical importance

A CRISPR way for accelerating cereal crop improvement: Progress and challenges

DeteX: A highly accurate software for detecting SNV and InDel in single and paired NGS data in cancer research

Comparative transcriptome analyses of immune responses to LPS in peripheral blood mononuclear cells from the giant panda, human, mouse, and monkey

Differences in MB-COMT DNA methylation in monozygotic twins on phenotypic indicators of impulsivity

SLC25A1-associated prognostic signature predicts poor survival in acute myeloid leukemia patients

Fc gamma receptor IIb in tumor-associated macrophages and dendritic cells drives poor prognosis of recurrent glioblastoma through immune-associated signaling pathways

Transcriptome and pan-cancer system analysis identify PM2.5-induced stanniocalcin 2 as a potential prognostic and immunological biomarker for cancers

Corrigendum: Construction of an immune-related signature for predicting the ischemic events in patients undergoing carotid endarterectomy

Full-length transcriptome sequencing reveals the molecular mechanism of monoterpene and sesquiterpene biosynthesis in Cinnamomum burmannii

Is an SV caller compatible with sequencing data? An online recommendation tool to automatically recommend the optimal caller based on data features

Telomere maintenance-related genes are important for survival prediction and subtype identification in bladder cancer

Clinical and immunological characteristics of TGM3 in pan-cancer: A potential prognostic biomarker

Case report: LAMC3-associated cortical malformations: Case report of a novel stop-gain variant and literature review

Identification of two rare NPRL3 variants in two Chinese families with familial focal epilepsy with variable foci 3: NGS analysis with literature review

Incorporating genome-wide and transcriptome-wide association studies to identify genetic elements of longissimus dorsi muscle in Huaxi cattle

Effect of CX3CL1/CX3CR1 gene polymorphisms on the clinical efficacy of carboplatin therapy in Han patients with ovarian cancer

Coding roles of long non-coding RNAs in breast cancer: Emerging molecular diagnostic biomarkers and potential therapeutic targets with special reference to chemotherapy resistance

Identification of ubiquitination-related gene classification and a novel ubiquitination-related gene signature for patients with triple-negative breast cancer

Genome-wide imputed differential expression enrichment analysis identifies trait-relevant tissues

Whole-genome resequencing reveals genetic diversity and selection characteristics of dairy goat

Epigenetic regulations as drivers of insecticide resistance and resilience to climate change in arthropod pests

Analysis of genotype × environment interactions for agronomic traits of soybean (Glycine max [L.] Merr.) using association mapping

High expression of RNF169 is associated with poor prognosis in pancreatic adenocarcinoma by regulating tumour immune infiltration

Genome-wide identification and expression analysis of the ZF-HD gene family in pea (Pisum sativum L.)

Wheat end-use quality: State of art, genetics, genomics-assisted improvement, future challenges, and opportunities

A circadian rhythm-related gene signature for prognosis, invasion and immune microenvironment of breast cancer

Construction and validation of a novel ferroptosis-related signature for evaluating prognosis and immune microenvironment in ovarian cancer

Editorial: Forensic investigative genetic genealogy and fine-scale structure of human populations

Survival association of XRCC1 for patients with head and neck squamous cell carcinoma: A systematic review and meta-analysis

Editorial: Application of fishes as biological models in genetic studies

A new ferroptosis-related genetic mutation risk model predicts the prognosis of skin cutaneous melanoma

Supervised learning techniques for dairy cattle body weight prediction from 3D digital images

Functional impact of multi-omic interactions in breast cancer subtypes

Genetic parameters estimation and genome molecular marker identification for gestation length in pigs

Whole genome sequencing of Clarireedia aff. paspali reveals potential pathogenesis factors in Clarireedia species, causal agents of dollar spot in turfgrass

Molecular breeding of barley for quality traits and resilience to climate change

Genetic and phenotypic correlations among feed efficiency, immune and production traits in indigenous chicken of Kenya

Multi-functional gene ZNF281 identified as a molecular biomarker in soft tissue regeneration and pan-cancer progression

Metabolite profiling and transcriptome analyses provide insight into the regulatory network of graft incompatibility in litchi

COVID-19 inhibits spermatogenesis in the testes by inducing cellular senescence

An oxidative stress-related signature for predicting the prognosis of liver cancer

Doubly bi-allelic variants of MTHFR and MTHFD1 in a Chinese patient with hyperhomocysteinemia and failure of folic acid therapy

Editorial: The origination of genetic novelties: New genes, new regulations, and new cell types

Identification of an unrecognized circRNA associated with development of renal fibrosis

Using whole genome sequence to compare variant callers and breed differences of US sheep

A novel missense ALMS1 variant causes aberrant splicing identified in a cohort of patients with Alström syndrome

Untargeted metabolomics reveals the effect of rearing systems on bone quality parameters in chickens

A four-lncRNA risk signature for prognostic prediction of osteosarcoma

Relationship between the image characteristics of artificial intelligence and EGFR gene mutation in lung adenocarcinoma

Mesoangioblasts at 20: From the embryonic aorta to the patient bed

Identification of oncogenes and tumor-suppressor genes with hepatocellular carcinoma: A comprehensive analysis based on TCGA and GEO datasets

Non-coding RNA and autophagy: Finding novel ways to improve the diagnostic management of bladder cancer

Recent advances in epigenetic anticancer therapeutics and future perspectives

Single-cell omics: A new direction for functional genetic research in human diseases and animal models

Editorial: Traditional and up-to-date genomic insights into domestic animal diversity

Molecular mechanisms of long noncoding RNAs associated with cervical cancer radiosensitivity

GWAS of depression in 4,520 individuals from the Russian population highlights the role of MAGI2 (S-SCAM) in the gut-brain axis

Selection signature analysis and genome-wide divergence of South African Merino breeds from their founders

Immune-related gene signature associates with immune landscape and predicts prognosis accurately in patients with skin cutaneous melanoma

Identification of rare thalassemia variants using third-generation sequencing

Editorial: The evolution of biomineralization in metazoans

Biological characteristics of γδT cells and application in tumor immunotherapy

Differential DNA methylation associated with multiple sclerosis and disease modifying treatments in an underrepresented minority population

Editorial: Long-read sequencing—Pitfalls, benefits and success stories

A novel pyroptosis scoring model was associated with the prognosis and immune microenvironment of esophageal squamous cell carcinoma

Differential methylation of microRNA encoding genes may contribute to high myopia

Construction of an original anoikis-related prognostic model closely related to immune infiltration in gastric cancer

Honey bee populations of the USA display restrictions in their mtDNA haplotype diversity

Comprehensive pan-cancer analysis and the regulatory mechanism of AURKA, a gene associated with prognosis of ferroptosis of adrenal cortical carcinoma in the tumor micro-environment

Machine learning in the development of targeting microRNAs in human disease

Genes related to N6-methyladenosine in the diagnosis and prognosis of idiopathic pulmonary fibrosis

A microarray data analysis investigating the pathogenesis and potential biomarkers of autophagy and ferroptosis in intervertebral disc degeneration

Genomic diversity and relationship analyses of endangered German Black Pied cattle (DSN) to 68 other taurine breeds based on whole-genome sequencing

Hybrid gMLP model for interaction prediction of MHC-peptide and TCR

Mapping of a QTL associated with sucrose content in peanut kernels using BSA-seq

Experimental verification and comprehensive analysis of m7G methylation regulators in the subcluster classification of ischemic stroke

Novel variants of NEK9 associated with neonatal arthrogryposis: Two case reports and a literature review

Bioinformatic analysis and machine learning to identify the diagnostic biomarkers and immune infiltration in adenomyosis

Screening and identifying a novel M-MDSCs-related gene signature for predicting prognostic risk and immunotherapeutic responses in patients with lung adenocarcinoma

Enrichment of titin-truncating variants in exon 327 in dilated cardiomyopathy and its relevance to reduced nonsense-mediated mRNA decay efficiency

A disease-related essential protein prediction model based on the transfer neural network

Editorial: Explainable, trustworthy and responsive intelligent processing of biological resources integrating data, information, knowledge, and wisdom—Volume II

An IFN-γ-related signature predicts prognosis and immunotherapy response in bladder cancer: Results from real-world cohorts

CRISPR/Cas9-editing of KISS1 to generate pigs with hypogonadotropic hypogonadism as a castration free trait

Editorial: Population genetics and conservation of aquatic species

Genome-wide exploration of a pyroptosis-related gene module along with immune cell infiltration patterns in bronchopulmonary dysplasia

The prognosis difference between elderly and younger patients with adrenocortical carcinoma

siMS score- method for quantification of metabolic syndrome, confirms co-founding factors of metabolic syndrome

Identification of the diagnostic genes and immune cell infiltration characteristics of gastric cancer using bioinformatics analysis and machine learning

Effects of common full-sib families on accuracy of genomic prediction for tagging weight in striped catfish Pangasianodon hypophthalmus

The first case report of CODAS syndrome in Chinese population caused by two LONP1 pathogenic mutations

Editorial: Functional analysis of species-specific non-coding RNAs in plants

Genetic screening for hypertension and COVID-19 reveals functional variation of SPEG potentially associated with severe COVID-19 in women

Pan-cancer analyses reveal IGSF10 as an immunological and prognostic biomarker

A pan-cancer analysis reveals role of clusterin (CLU) in carcinogenesis and prognosis of human tumors

Identification of a tissue resident memory CD8 T cell-related risk score signature for colorectal cancer, the association with TME landscapes and therapeutic responses

Pan-cancer analysis of the prognostic and immunological role of Fanconi anemia complementation group E

Maternal body condition and season influence RNA deposition in the oocytes of alfalfa leafcutting bees (Megachile rotundata)

Epigenome-wide association studies of meat traits in Chinese Yorkshire pigs highlights several DNA methylation loci and genes

Identification of extremely GC-rich micro RNAs for RT-qPCR data normalization in human plasma

An integrative analysis of an lncRNA–mRNA competing endogenous RNA network to identify functional lncRNAs in uterine leiomyomas with RNA sequencing

Study of genetic variability, heritability, and genetic advance for yield-related traits in tomato (Solanum lycopersicon MILL.)

An immune and epithelial–mesenchymal transition-related risk model and immunotherapy strategy for grade II and III gliomas

Identification of a nucleotide metabolism-related signature to predict prognosis and guide patient care in hepatocellular carcinoma

Gastroesophageal reflux disease and oral symptoms: A two-sample Mendelian randomization study

Mapping the FtsQBL divisome components in bacterial NTD pathogens as potential drug targets

An original cuproptosis-related genes signature effectively influences the prognosis and immune status of head and neck squamous cell carcinoma

Sweetpotato cultivars responses to interactive effects of warming, drought, and elevated carbon dioxide

Development of a novel pyroptosis-related LncRNA signature with multiple significance in acute myeloid leukemia

Case report: A third variant in the 5′ UTR of TWIST1 creates a novel upstream translation initiation site in a child with Saethre-Chotzen syndrome

Evolutionary genomics: Insights from the invasive European starlings

Neurobehavioral characteristics of mice with SETD5 mutations as models of IDD23 and KBG syndromes

Up-regulated PIF1 predicts poor clinical outcomes and correlates with low immune infiltrates in clear cell renal cell carcinoma

Data report on three datasets: Mortality patterns between agricultural and non-agricultural ward areas

Breast cancer detection: Shallow convolutional neural network against deep convolutional neural networks based approach

Genetic heritability as a tool to evaluate the precision of 24-hour recall dietary questionnaire variables in UK Biobank

Developing a pyroptosis-related gene signature to better predict the prognosis and immune status of patients with head and neck squamous cell carcinoma

Prognostic prediction of clear cell renal cell carcinoma based on lipid metabolism-related lncRNA risk coefficient model

Immune-related gene signature to predict TACE refractoriness in patients with hepatocellular carcinoma based on artificial neural network

Editorial: Transcriptional and post-transcriptional regulations in agricultural species after stresses

The association between plasma chemokines and breast cancer risk and prognosis: A mendelian randomization study

A machine learning-based approach to ERα bioactivity and drug ADMET prediction

Exploring prognostic indicators in the pathological images of ovarian cancer based on a deep survival network

Clinical, genetic, and experimental research of hyperphenylalaninemia

A novel cuproptosis-related lncRNA signature predicts prognosis and therapeutic response in bladder cancer

Full-length transcriptome of in Medicago sativa L. roots in response to drought stress

Proteome changes of dairy calves rumen epithelium from birth to postweaning

Pharmacogenomic variabilities in geo-ancestral subpopulations and their clinical implications: Results of collaborations with Hmong in the United States

A metabolism-related gene signature for predicting the prognosis in thyroid carcinoma

Skin-specific transgenic overexpression of ovine β-catenin in mice

Construction of HBV gene-related prognostic and diagnostic models for hepatocellular carcinoma

Case report: Craniofrontonasal syndrome caused by a novel variant in the EFNB1 gene in a Colombian woman

Editorial: Genetic Regulation of Meat Quality Traits in Livestock Species

A high-density genetic map and QTL fine mapping for growth- and sex-related traits in red swamp crayfish (Procambarus clarkii)

Growth performance, survivability and profitability of improved smallholder chicken genetics in Nigeria: A COVID-19 intervention study

A novel transcription factor-based signature to predict prognosis and therapeutic response of hepatocellular carcinoma

SADLN: Self-attention based deep learning network of integrating multi-omics data for cancer subtype recognition

Development and validation of a prognostic prediction model for iron metabolism-related genes in patients with pancreatic adenocarcinoma

Editorial: Genetic analysis of reproductive traits in livestock

Editorial: Integrative analysis of single-cell and/or bulk multi-omics sequencing data

The impact of violating the independence assumption in meta-analysis on biomarker discovery

Case report: Therapy adherence, MTTP variants, and course of atheroma in two patients with HoFH on low-dose, long-term lomitapide therapy

Inference of gene-environment interaction from heterogeneous case-parent trios

Using publicly available datasets to identify population-based transcriptomic landscape contributing to the aggressiveness of breast cancer in young women

Integrative approach for validation of six important fish species inhabiting River Poonch of north-west Himalayan region (India)

Editorial: Genetic validation and its role in crop improvement

Editorial: Artificial intelligence for extracting phenotypic features and disease subtyping applied to single-cell sequencing data

Association of environmental exposure to chromium with differential DNA methylation: An epigenome-wide study

Genome-wide identification, evolution and transcriptome analysis of GRAS gene family in Chinese chestnut (Castanea mollissima)

Whole-genome characterization of large-cell lung carcinoma: A comparative analysis based on the histological classification

SDHB exon 1 deletion: A recurrent germline mutation in Colombian patients with pheochromocytomas and paragangliomas

Identification of oxidative stress-related genes and potential mechanisms in atherosclerosis

Two novel variants in CEP152 caused Seckel syndrome 5 in a Chinese family

A classification method of gastric cancer subtype based on residual graph convolution network

Unravelling the instability of mutational signatures extraction via archetypal analysis

Comparative transcriptomic analysis of long noncoding RNAs in Leishmania-infected human macrophages

Complete sequence and comparative analysis of the mitochondrial genome of the rare and endangered Clematis acerifolia, the first clematis mitogenome to provide new insights into the phylogenetic evolutionary status of the genus

Association of methylenetetrahydrofolate reductase (MTHFR) rs1801133 (677C>T) gene polymorphism with ischemic stroke risk in different populations: An updated meta-analysis

Improper preanalytical processes on peripheral blood compromise RNA quality and skew the transcriptional readouts of mRNA and LncRNA

Forensic efficiencies of individual identification, kinship testing and ancestral inference in three Yunnan groups based on a self-developed multiple DIP panel

Genetic marker identification of SEC13 gene for milk production traits in Chinese holstein

RNA Pol III promoters—key players in precisely targeted plant genome editing

Editorial: Omics technologies in livestock improvement: From selection to breeding decisions

Prognostic implication and immunotherapy response prediction of a ubiquitination-related gene signature in breast cancer

How many missed abortions are caused by embryonic chromosomal abnormalities and what are their risk factors?

Case report: Incomplete penetrance of autosomal dominant myotonia congenita caused by a rare CLCN1 variant c.1667T>A (p.I556N) in a Malaysian family

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Forensic efficiencies of individual identification, kinship testing and ancestral inference in three Yunnan groups based on a self-developed multiple DIP panel

Content Provider	frontiers
Author	Chen, Man Lan, Qiong Nie, Shengjie Hu, Liping Fang, Yating Cui, Wei Bai, Xiaole Liu, Liu Zhu, Bofeng
Abstract	Deletion/insertion polymorphism (DIP), as a short sequence insertion/deletion polymorphic genetic marker, has attracted the attention of forensic genetic scientist due to its lack of stutter, short amplicon and abundant ancestral information. In this study, based on a self-developed 43 autosomal deletion/insertion polymorphism (A-DIP) loci panel which could meet the forensic application purposes of individual identification, kinship testing and ancestral inference to some extent, we evaluated the forensic efficiencies of the above three forensic objectives in Chinese Yi, Hani and Miao groups of Yunnan province. The cumulative match probability (CPM) and combined probability of exclusion (CPE) of these three groups were 1.11433E-18, 8.24299E-19; 4.21721E-18, 0.999610217; 0.999629285 and 0.999582084, respectively. Average 96.65% full sibling pairs could be identified from unrelated individual pairs (as likelihood ratios > 1) using this DIP panel whereas the average false positive rate was 3.69% in three target Yunnan groups. With the biogeographical ancestor prediction models constructing by extreme gradient boosting (XGBoost) and support vector machine (SVM) algorithms, 0.8239 (95% CI 0.7984, 0.8474) of the unrelated individuals could be correctly divided according to the continental origins based on the 43 A-DIPs which were large frequency distribution differentiations among different continental populations. The present results of principal component analysis (PCA), multidimensional scaling (MDS), neighbor joining (NJ) and maximum likelihood (ML) phylogenetic trees and STRUCTURE analyses indicated that these three Yunnan groups had relatively close genetic distances with East Asian populations.
ISSN	16648021
DOI	10.3389/fgene.2022.1057231
Volume Number	13
Journal	Frontiers in Genetics
Language	English
Publisher Date	2023-01-04
Access Restriction	Open
Subject Keyword	Extreme gradient boosting Support vector machine Deletion/insertion polymorphism Individual identification Full-sibling identification
Content Type	Text
Resource Type	Article
Subject	Genetics Molecular Medicine Genetics (clinical)

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