NDLI: The complete chloroplast genome of <i>Bupleurum marginatum</i> var. <i>stenophyllum</i> (H. Wolff) Shan & Yin Li (Apiaceae), a new substitution for Chinese medicinal material, Bupleuri Radix (Chai hu).

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The complete chloroplast genome of Bupleurum marginatum var. stenophyllum (H. Wolff) Shan & Yin Li (Apiaceae), a new substitution for Chinese medicinal material, Bupleuri Radix (Chai hu).

Content Provider	Europe PMC
Author	Zhang, Gaixia Wang, Hui Jiang, Jiemei Wang, Qiuling Li, Baoli Shi, Linchun Wei, Jianhe
Copyright Year	2021
Abstract	AbstractThe root of Bupleurum marginatum var. stenophyllum (H. Wolff) Shan & Yin Li (Apiaceae), a new substitution for the popular Chinese medicinal material, Bupleuri Radix (Chai hu), is not easily distinguishable via traditional methods. The complete chloroplast genome sequence of B. marginatum var. stenophyllum was characterized using next-generation sequencing and the de novo assembly method. The complete genome was 155,576 bp in length and contained two inverted repeat (IR) regions of 26,311 bp, a large single-copy (LSC) region of 85,351 bp, and a small single-copy (SSC) region of 17,603 bp. It encoded 113 unique genes consisting of 79 protein-coding genes (PCGs), 30 transfer RNA genes, and four ribosomal RNA genes. Importantly, three genes (petB, petD and rps16) with small exon, and one trans-splicing gene (rps12) were correctly annotated. The overall GC content of the B. marginatum var. stenophyllum chloroplast genome is 37.7%. The phylogenetic analyses indicated that B. marginatum var. stenophyllum was closely related to B. marginatum. Moreover, many genetic information sites were available for distinguishing B. marginatum var. stenophyllum from the official ‘Chai hu’ plant sources, B. scorzonerifolium Willd. and B. chinense DC.
Page Count	3
Volume Number	6
PubMed Central reference number	PMC7872558
Issue Number	2
PubMed reference number	33659702
Journal	Mitochondrial DNA. Part B, Resources [Mitochondrial DNA B Resour]
e-ISSN	23802359
DOI	10.1080/23802359.2020.1870899
Language	English
Publisher	Taylor & Francis
Publisher Date	2021-02-09
Access Restriction	Open
Rights License	This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.
Subject Keyword	Bupleurum marginatum var. stenophyllum complete genome phylogenetic analysis substitution discrimination
Content Type	Text
Resource Type	Article
Subject	Genetics Molecular Biology

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