NDLI: The comparative gene expression concern to the seed pigmentation in maize (Zea mays L.).

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The comparative gene expression concern to the seed pigmentation in maize (Zea mays L.).

Content Provider	Europe PMC
Author	Sa, Kyu Jin Choi, Ik-Young Lee, Ju Kyong
Copyright Year	2020
Abstract	Maize seed pigmentation is one of the important issue to develop maize seed breeding. The differently gene expression was characterized and compared for three inbred lines, such as the pigment accumulated seed (CM22) and non-pigmented seed (CM5 and CM19) at 10 days after pollination. We obtained a total of 63,870, 82,496, and 54,555 contigs by de novo assembly to identify gene expression in the CM22, CM5, and CM19, respectably. In differentially expressed gene analysis, it was revealed that 7,044 genes were differentially expressed by at least two-fold, with 4,067 upregulated in colored maize inbred lines and 2,977 upregulated in colorless maize inbred lines. Of them,18 genes were included to the anthocyanin biosynthesis pathways, while 15 genes were upregulated in both CM22/5 and CM22/19. Additionally, 37 genes were detected in the metabolic pathway concern to the seed pigmentation by BINs analysis using MAPMAN software. Finally, these differently expressed genes may aid in the research on seed pigmentation in maize breeding programs.
Related Links	https://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC7560445&blobtype=pdf
ISSN	1598866X
Journal	Genomics & Informatics [Genomics Inform]
Volume Number	18
PubMed Central reference number	PMC7560445
Issue Number	3
PubMed reference number	33017873
e-ISSN	22340742
DOI	10.5808/gi.2020.18.3.e29
Language	English
Publisher	Korea Genome Organization
Publisher Date	2020-09-09
Access Restriction	Open
Rights License	(CC) This is an open-access article distributed under the terms of the Creative Commons Attribution license(https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, andreproduction in any medium, provided the original work is properly cited. (c) 2020, Korea Genome Organization
Subject Keyword	anthocyanin colored and colorless maize gene expression maize RNA sequence
Content Type	Text
Resource Type	Article
Subject	Genetics Ecology, Evolution, Behavior and Systematics Health Informatics

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