NDLI: Gene presence absence in Serratia plymuthica strains (Dataset)

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Gene presence absence in Serratia plymuthica strains (Dataset)

Content Provider	Dryad
Author	Fatiah, Raudhatul Suliansyah, Irfan Hon Tjong, Djong Syukriani, Lily Yunita, Roza Trivano, Robi Azizah, Nurefni Jamsari, Jamsari
Abstract	Background: The Serratia plymuthica UBCF_13 is a phylloplane associated plant bacterium showing antifungal activity. Whole genome sequence provides information to get more insight about evolutionary study, unique traits in the genome and possibility to explore potential of this microorganism for future study. Here, we report the genome sequence of S. plymuthica UBCF_13 and the comparison with other seventeen strains. Methods: A pan-genome based method was used to identify the core-genome and the the gene presence or absence in of the S. plymuthica strains Results: The pan-genome idenfied the gene presence and absence in the S. plymuthica strains. The total genes was 10455. Comparative genomics analysis revealed 3.315 core proteins/ genes shared among 18 strains. The genome of the UBCF_13 harbors 488 unique genes, of which 300 genes are only contained by this strain.
File Size	9103265
File Format	HTM / HTML
ISSN	20461402
DOI	10.5061/dryad.1zcrjdfsj
Alternate Webpage(s)	https://datadryad.org/stash/downloads/file_stream/867668
Alternate Webpage(s)	https://datadryad.org/stash/downloads/file_stream/867667
Language	English
Publisher Date	2021-08-09
Access Restriction	Open
Content Type	Text
Resource Type	Data Set
Subject	Immunology and Microbiology Medicine Biochemistry, Genetics and Molecular Biology Pharmacology, Toxicology and Pharmaceutics

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