NDLI: Sustainable adaptive grid supercomputing: multiscale simulation of semiconductor processing across the pacific

Please wait, while we are loading the content...

Compframe: developement of component frameworks for high performance computing

Large-scale electronic structure calculations of high-Z metals on the BlueGene/L platform

The cosmic simulator

High productivity computing and usable petascale systems

A performance comparison through benchmarking and modeling of three leading supercomputers: blue Gene/L, Red Storm, and Purple

HPCBugBase: an experience base for HPC defects

The coming merger of biological and non biological intelligence

Advanced MPI: I/O and one-sided communication

GCE06 - Grid computing environments 2006

Secure file sharing

Addressing high performance and grid challenges: Intel and CERN

HPC computational systems of 2020

Remote runtime steering of integrated terascale simulation and visualization

Opening address

Exhibitor party

Trading memory for disk: using parallel access to fast InfiniBand disk arrays for large computational chemistry applications

Keynote Speech: Raymond Kurzweil

Dynamic data-driven applications systems

Large scale drop impact analysis of mobile phone using ADVC on Blue Gene/L

Understanding our cosmic origin through petascale computing

High performance NFS: facts and fictions

PBPI: a high performance implementation of Bayesian phylogenetic inference

Employing peer-to-peer services for robust grid computing

Sidney Fernbach award lecture: solving Einstein's equations through computational science

Parallel computing 101

International workshop on performance analysis and optimization of high-end computing systems

SC06 video: powerful beyond imagination

High speed data gathering, distribution and analysis for physics discoveries at the large Hadron collider

Unleash the power of stream processors with a new software platform for commodity hardware

HPC storage systems of 2020

Computational oral and speech science on e-science infrastructures

Laboratory for collaborative diagnostics: Malaria TV

Scaling NFS through RDMA for cluster computing

GHPN/GLIF: delivery of network services across heterogeneous optical domains

High-performance computing for exact numerical approaches to quantum many-body problems on the earth simulator

The blue brain project

Data intensive computing

Toward real-time image guided neurosurgery using distributed and grid computing

Statistical inference for efficient microarchitectural and application analysis

Navy and Marine Corps high performance computing

Application development using eclipse and the parallel tools platform

Best practice in HPC procurements

Transporting sloan digital sky survey data using SECTOR

Grid for business information: extracting maximum value from information

High-throughput visual analytics biological sciences: turning data into knowledge

Patient safety training using advanced medical and network technology

Conference reception

HUSt: a heterogeneous unified storage system for GIS grid

The 2006 HPC challenge awards

\$158/GFLOPS astrophysical N-body simulation with reconfigurable add-in card and hierarchical tree algorithm

Elucidating laws of the unruly jungle with computational approaches to complex ecological networks

What's inside the grid? a discussion of standards and the future of computing

The potential energy efficiency of vector acceleration

CCA-LISI: on designing a common component architecture parallel sparse linear solver interface

Open source software: a powerful model for inspiring imagination

Introduction to scientific workflow management and the Kepler system

TeraGrid Institute

High throughput feature-matching analysis of biological spectral data

Using FPGAs in supercomputers: breaking with reconfigurable computing

Extending interactivity in grid collaboration tools for long distance biomedical training and research

High performance data analysis for particle physics using the Gfarm file system

Open MPI community meeting

A 55 TFLOPS simulation of amyloid-forming peptides from yeast prion Sup35 with the special-purpose computer system MDGRAPE-3

Terascale direct numerical simulations of turbulent combustion

Is high-performance reconfigurable computing the next supercomputing paradigm?

Locality and parallelism optimization for dynamic programming algorithm in bioinformatics

Adaptive coarsening: simple, effective floating-point compression

Real-time supercomputing and technology for games and entertainment

A practical approach to performance analysis and modeling of large-scale systems

GCE06 - Grid computing environments 2006

All in a day's work: advancing data-intensive research with the data capacitor

gridMathematica: overview and new developments

ARCTIS: augmented reality collaborative tangible interactive simulation

OSCAR community meeting

The BlueGene/L supercomputer and quantum ChromoDynamics

High performance computing for combustion applications

100 years of digital data

Large image correction and warping in a cluster environment

A middleware approach in facilitating Web-Mobile-Desktop (WMD) application communication in distributed systems

Chip innovations and computer revolution

Computing protection in open HPC environments

General-purpose GPU computing: practice and experience

Streaming uncompressed 4K scientific media

Applying scalable acalis field programmable multi-cores to HPC

Semantically-enhanced collaborative engineering and design services

Performance tools for large-scale clusters

Kinetic simulation of fusion plasmas

Multi-Core for HPC: breakthrough or breakdown?

The design space of data-parallel memory systems

Zero-Force MPI: toward tractable toolkits for high performance computing

Seymour Cray award lecture

GPGPU: general-purpose computation on graphics hardware

2nd IEEE/ACM international workshop on high performance computing for nano-science and technology

VFER: high-performance transport in user space

Dynamic ethernet lightpaths: on-demand 10GbE and GbE connections for research networks

Sharing interactive high-resolution media for advanced collaboration

TORQUE resource manager

High performance computing in magnetic fusion energy research

Computing large sparse multivariate optimization problems with an application in biophysics

Charm++ simplifies coding for the cell processor

Introduction to OpenMP

Workshop on ultra-scale visualization

Advances in RAID and HPC storage reliability

AccessGrid in the Canadian HPC scene

TotalView tips and tricks

Search for higgs boson diphoton decay with CMS at LHC

Detecting distributed scans using high-performance query-driven visualization

A meta-provenance service to infer context from provenance data of distributed entities

Eliminating parallel application memory bugs with TotalView

Petascale data storage

Low-latency ethernet: the ubiquitous datacenter interconnect

Broadening participation on the grid

Cell BE software programming and toolkits

25 years of accelerator modeling

Sequoia: programming the memory hierarchy

Component architectures for quantum chemistry: forging new capabilities and insights

Open|SpeedShop: open source performance analysis for Linux clusters

1st IEEE/ACM international workshop on virtualization technologies in distributed computing

Paradigm shift in the data storage industry

New voices and new visions for engaging Native American students in computer science

HPC's role in global automotive design

Science at the petascale: tools in the toolbox

Scalable algorithms for molecular dynamics simulations on commodity clusters

Energy/performance modeling for collective communication in 3-D torus cluster networks

Principles and practice of experimental performance measurement and analysis of parallel applications

iWARP ethernet: key to driving ethernet into high performance environments

AGVCR - AccessGrid Video 'Cassette' Recorder

InfiniBand routing and switching: improving fabric scalability, distance, and fault isolation

Ab initio nuclear structure determination

A software based approach for providing network fault tolerance in clusters with uDAPL interface: MPI level design and performance evaluation

Accelerating web protocols using RDMA

The HPC Challenge (HPCC) benchmark suite

Future of storage and commodity clusters

Memetic: an AG integrated meeting recorder

Toward material-specific simulations of high temperature superconductivity

CellSs: a programming model for the cell BE architecture

Scalable software infrastructure project

Cluster storage and file system technologies

High performance networks for the future

InterPlay: dancing on the banks of Packet Creek

Open|SpeedShop: open source performance analysis for Linux clusters

Atomic scale design of nanostructures

Blue matter: approaching the limits of concurrency for classical molecular dynamics

ASTEX: a hot path based thread extractor for distributed memory system on a chip

Application supercomputing and multiscale simulation techniques

Global data sharing: addressing the challenge of data locality

Performance and presentation production elements

The pathway to petascale science

Re-inventing the x86 architecture: quad-core and beyond

Problem diagnosis in large-scale computing environments

A study of process arrival patterns for MPI collective operations

Parallel I/O in practice

Network topologies for high performance computing: ethernet, InfiniBand and storage

Science gateway, portal and other community interfaces to high end resources

Beyond the beyond and the extremes of computing

A memory model for scientific algorithms on graphics processors

Optimized collectives for PGAS languages with one-sided communication

Reconfigurable supercomputing

Accelerating data for compute clusters and grids

The meeting list tool - a shared application for sharing dynamic information in meetings

SPEC HPG benchmarks

Preliminary investigation of advanced electrostatics in molecular dynamics on reconfigurable computers

Scalable compression and replay of communication traces in massively parallel environments

Introduction to grid computing: the first steps

Enabling next generation supercomputing clusters

Remote inferface control within an access grid environment

TOP500 supercomputer

From mesh generation to scientific visualization: an end-to-end approach to parallel supercomputing

Collective operations using low level interfaces on BG/L

Application performance on the Blue Gene architecture

Analyzing all the data all the time

The Canadian design research network's prototype design grid

Approaching petascale computing

Adaptive routing in high-radix clos network

Toward a power efficient computer architecture for Barnes-Hut N-body simulations

Issues for the future of supercomputing: impact of Moore's law and architecture on application performance

The road to PetaFLOP clusters

Evolving stories project: beautiful instants

CyberBridges: a model collaboration infrastructure for e-science

Nested OpenMP for efficient computation of 3D critical points in multi-block CFD datasets

Fast binary serialization for grid systems with XBS

High performance data transfer

Hitachi's approach to high perfomance computing

Closing comments

Cyberinfrastructure and education

A near-optimal real-time hardware scheduler for large cardinality crossbar switches

Data-driven time parallelization

Programming using RapidMind on the Cell BE

Application acceleration through MPI overlap

Extreme application scalability

Modeling pulse propagation and scattering in a dispersive medium: performance of MPI/OpenMP hybrid code

Improving the performance of parallel backprojection on a reconfigurable supercomputer

Program analysis tools for massively parallel applications: how to achieve highest performance

Cray: creating a path to adaptive supercomputing

Fabric-agnostic RDMA with OpenFabrics enterprise distribution: promises, challenges, and future direction

Level-wise scheduling algorithm for fat tree interconnection networks

Harnessing grid resources to enable the dynamic analysis of large astronomy datasets

Realistic visualization for large-scale simulations

Building highly scalable and reliable InfiniBand clusters

The open trace format (OTF) and open tracing for HPC

Performance modeling and optimization of a high energy colliding beam simulation code

Utilizing grid computing technologies for advanced reservoir studies

High-performance computing methods for computational genomics

NEC High performance computing solutions

Programming FPGAs: challenges and successes

Hypergraph partitioning for automatic memory hierarchy management

Human arterial tree simulation on TeraGrid

Overview of the global arrays parallel software development toolkit

Innovation beyond imagination: the road to PetaFLOPS computing

Improving grid resource allocation via integrated selection and binding

Implementing algorithms on FPGAs using high-level languages and low-level libraries

UPC: unified parallel C

Multiple range query optimization with distributed cache indexing

The Computer Failure Data Repository (CFDR): collecting, sharing and analyzing failure data

Fujitsu's vision for high performance computing

Altair's PBS professional update

Toward a doctrine of containment: grid hosting with adaptive resource control

Improving fault resilience of high performance applications

AMD versus Intel: the compiler as referee

Best practices in cluster management

Estimating query result sizes for proxy caching in scientific database federations

Getting ahead, staying ahead: modular sun x64 servers for HPC

Grid capacity planning with negotiation-based advance reservation for optimized QoS

The structural simulation toolkit: exploring novel architectures

Distributed IMSL with 3rd Party Solutions in C, Java and .NET

Evaluating petascale infrastructure systems: benchmarks, models, and applications

Parallel genomic sequence-searching on an ad-hoc grid: experiences, lessons learned, and implications

DejaVu: transparent user-level checkpointing, migration and recovery for distributed systems

So What's innovative and exotic about star-P for MATLAB and other clients?

Monitoring trix

High-performance and scalable MPI over InfiniBand with reduced memory usage: an in-depth performance analysis

Asynchronous programming with Tarragon

Running a Top-500 benchmark on a windows compute cluster server cluster

Multi-core clusters usage model

Sustainable adaptive grid supercomputing: multiscale simulation of semiconductor processing across the pacific

Parallel massive scale-free graph generators

Acceleration technologies: understanding the differences and assessing what's right for you

PVFS: a parallel file system

Adaptive, transparent frequency and voltage scaling of communication phases in MPI programs

NCSA environmental cyberinfrastructure demonstration project: creating cyberenvironments for environmental engineering and hydrological science communities

Novel techniques for debugging and optimizing parallel applications

User experiences with the SGI Altix

High-performance dynamic graphics streaming for scalable adaptive graphics environment

Targeting multi-core architectures for linear algebra applications

Multi-paradigm computing

Visualization using Linux clusters

Software routing and aggregation of messages to optimize the performance of HPCC randomaccess benchmark

Powerful new research computing system available via the TeraGrid

Debugging code written for Multi-Core chip architectures

Is 99% utilization of a supercomputer a good thing?

Revisiting web server workload invariants in the context of scientific web sites

Engineering the 100 terabyte turbulence database (or how to track particles at home)

WiFiber: new spectrum links for wireless gigabit transmission

Beyond MPI: community experience with emerging parallel languages

Architectures and APIs: assessing requirements for delivering FPGA performance to applications

High resolution, high throughput protein structure prediction using IBM Blue Gene supercomputers: predicting CASP targets in record time

Advanced memory devices to enhance cluster performance

FAST-OS: forum to address scalable technology for runtime and operating systems

End-system aware, rate-adaptive protocol for network transport in LambdaGrid environments

Optimized large file access in storage clusters using common TCP/IP-based file transfer protocols

High speed firewalls: securing the 10 gigabit ethernet WAN

Exploring the importance of high availability MPIs

Exploiting the performance of 32 bit floating point arithmetic in obtaining 64 bit accuracy (revisiting iterative refinement for linear systems)

To bid or not to bid: a hybrid market-based resource allocation framework

Liquid cooling: a next generation data center strategy

InfiniBand and OpenFabrics at SC06

Evaluating grid portal security

SimBA: a discrete event simulator for performance prediction of volunteer computing projects

The weakest link: the impact of wide area networking on networked application performance

Internships and mentoring in high performance computing environments

FFT program generation for shared memory: SMP and multicore

A reconfigurable supercomputing library for accelerated parallel lagged-Fibonacci pseudorandom number generation

Topologies for improved InfiniBand latency

PAPI users group

Topology mapping for Blue Gene/L supercomputer

Parallel I/O advancements in air quality modeling systems

Seamless live migration of virtual machines over the MAN/WAN

TeraGrid outreach and campus partnerships

Supporting dynamic migration in tightly coupled grid applications

Pairwise alignments on the cell processor

The unified wire adapter

Designing a highly-scalable operating system: the Blue Gene/L story

IANUS: scientific computing on an FPGA-based architecture

The tera-10 system: implementing the number 1 supercomputer in Europe

Evaluation of a workflow scheduler using integrated performance modelling and batch queue wait time prediction

The finite-volume dynamical core on the cubed-sphere

Blades: innovations and viability for HPC

Design and implementation of a one-sided communication interface for the IBM eServer Blue Gene® supercomputer

Optimizing EUDOC for the IBM eServer Blue Gene supercomputer

Introducing LiquidIQ: a next generation system for high performance computing

Benchmarking XML processors for applications in grid web services

Network performance impact of a lightweight Linux for Cray XT3 compute nodes

CRUSH: controlled, scalable, decentralized placement of replicated data

Patterns in parallel programs: toward high-level understanding of large-scale traces

MPI performance analysis tools on Blue Gene/L

Reconfigurable accelerator for quantum Monte Carlo simulations in N-body systems

CycleMeter: detecting fraudulent peers in internet cycle sharing

Application controlled parallel asynchronous IO

Quantifying the potential benefit of overlapping communication and computation in large-scale scientific applications

Alef parallel SAT solver for HPC hardware

Designing a runtime system for volunteer computing

Bringing instruments into the grid

Blocking vs. non-blocking coordinated checkpointing for large-scale fault tolerant MPI

Performance evaluation of GPUs using the RapidMind development platform

Semantics for hybrid networks using the network description language

Cosmological simulations on supercomputers

The SAGA C++ reference implementation: a milestone toward new high-level grid applications

Designing a collaborative cyberinfrastructure for event-driven coastal modeling

Parallel performance wizard: a performance analysis tool for partitioned global-address-space programming models

Visualization of storage controller performance data

N-Body simulation on GPUs

Portable performance optimizations based on a performance history of the fusion microturbulence code GYRO

Employing peer-to-peer services for robust grid computing

Statistical inference for efficient microarchitectural and application analysis

HPCBugBase: an experience base for HPC defects

Sustainable adaptive grid supercomputing: multiscale simulation of semiconductor processing across the pacific

Content Provider	ACM Digital Library
Author	Sekiguchi, Satoshi Takemiya, Hiroshi Tanaka, Yoshio Vashishta, Priya Ogata, Shuji Kalia, Rajiv K. Nakano, Aiichiro
Abstract	We propose a reservation-based sustainable adaptive Grid supercomputing paradigm to enable tightly coupled computations of considerable scale (involving over 1,000 processors) and duration (over tens of continuous days) on a Grid of geographically distributed parallel supercomputers. The paradigm is demonstrated for an adaptive multiscale simulation application, in which accurate but compute-intensive quantum mechanical (QM) simulations are embedded within a classical molecular dynamics (Md) simulation only when and where high fidelity is required. Key technical innovations include: 1) an embedded divide-and-conquer algorithmic framework to maximally expose data and computation localities for enhanced scalability; 2) a buffered-cluster hybridization scheme to adaptively adjust MD/QM boundaries to maintain the model accuracy; and 3) a hybrid Grid remote procedure call (GridRPC) + message passing interface (MPI) Grid application framework to combine flexibility (adaptive resource allocation and migration), fault tolerance (automated fault recovery), and efficiency (scalable management of large computing resources). We have achieved an automated execution of multiscale MD/QM simulation on a Grid consisting of 6 supercomputer centers in Japan and the US (in total of 150 thousand processor-hours) for the dynamic simulation of implanted oxygen atoms in a silicon substrate, in which the number of processors changes dynamically on demand and resources are allocated and migrated dynamically according to both reservations and unexpected faults. The simulation results reveal a strong dependence of the oxygen penetration depth on the incident oxygen-beam position, which is useful information to further advance SIMOX (separation by implanted oxygen) technique to fabricate high speed and low power-consumption semiconductor devices.
File Format	HTM / HTML PDF
ISBN	0769527000
DOI	10.1145/1188455.1188566
Language	English
Publisher	Association for Computing Machinery (ACM)
Publisher Date	2006-11-11
Publisher Place	New York
Access Restriction	Subscribed
Subject Keyword	Quantum mechanics Message passing interface Molecular dynamics Density functional theory Multiscale simulation Grid remote procedure call Grid application
Content Type	Text
Resource Type	Article

Central Library (ISO-9001:2015 Certified)
Indian Institute of Technology Kharagpur
Kharagpur, West Bengal, India | PIN - 721302

See location in the Map
03222 282435
Mail: support@ndl.gov.in

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in