NDLI: Parallel and Distributed Spatial Simulation of Chemical Reactions

Please wait, while we are loading the content...

Cover Art

Title pagei

Title Page iii

Message from General Chair

Message from Program Chair

Mobility Models for Wireless Networks: Challenges, Pitfalls, and Successes

Time Jails: A Hybrid Approach to Scalable Network Emulation

Adaptive Model Update Algorithms for Remote Network Emulation

Toward Scalable Routing Experiments with Real-Time Network Simulation

Parallel Vehicular Traffic Simulation using Reverse Computation-based Optimistic Execution

Modelling and Simulation of Pedestrian Behaviours

Parallel and Distributed Spatial Simulation of Chemical Reactions

Secure Referee Selection for Fair and Responsive Peer-to-Peer Gaming

Stochastic Process Models for Packet/Analytic-Based Network Simulations

Performance Analysis of Real Traffic Carried with Encrypted Cover Flows

An Algorithm Selection Approach for Simulation Systems

Interval Branching

Symbiotic Simulation Systems: An Extended Definition Motivated by Symbiosis in Biology

Evaluating the Performance of Real Time Videoconferencing in Ad Hoc Networks Through Emulation

Scalable versus Accurate Physical Layer Modeling in Wireless Network Simulations

Hybrid Testbed Enabling Run-Time Operations for Wireless Applications

Federated Agent Based Modeling and Simulation: an Approach for Complex Critical Systems Analysis

Parallel and Distributed Simulation of Coalition Structure Generation in Cooperative Multi-agent Systems

A Formal Definition of Dynamic Structure Hybrid Simulation Model

A Dynamic Publish-Subscribe Network for Distributed Simulation

Managing Computational Complexity of Large-Scale Traffic Micro-Simulations

A Parallel Simulator for Quantum Fault Tolerance in the Presence of Correlated Errors

Clarifying Interoperability: The SISO CSPI PDG Standard for Commercial Off-The-Shelf Simulation Package Interoperability Reference Models

Efficient Execution on GPUs of Field-Based Vehicular Mobility Models

A Comparison of Interest Manager Mechanisms for Agent-Based Simulations Using a Time Warp Executive

DyMeLoR: Dynamic Memory Logger and Restorer Library for Optimistic Simulation Objects with Generic Memory Layout

An Agent-Based Environment for Simulation Model Composition

Advancing the Layered Approach to Agent-Based Crowd Simulation

Micro-Synchronization in Conservative Parallel Network Simulation

A Hybrid HLA Time Management Algorithm Based on Both Conditional and Unconditional Information

Author Index

Publisher's Information

Parallel and Distributed Spatial Simulation of Chemical Reactions

Content Provider	ACM Digital Library
Author	Park, Alfred Fujimoto, Richard Ewald, Roland Uhrmacher, Adelinde M. Jeschke, Matthias
Abstract	The application of parallel and distributed simulation techniques is often limited by the amount of parallelism available in the model. This holds true for large-scale cell-biological simulations, a field that has emerged as data and knowledge concerning these systems increases and biologists call for tools to guide wet-lab experimentation. A promising approach to exploit parallelism in this domain is the integration of spatial aspects, which are often crucial to a model's validity. We describe an optimistic, parallel and distributed variant of the Next-Subvolume Method (NSM), a method that augments the well-known Gillespie Stochastic Simulation Algorithm (SSA) with spatial features. We discuss requirements imposed by this application on a parallel discrete event simulation engine to achieve efficient execution. First results of combining NSM and the grid-inspired simulation system Aurora are shown.
Starting Page	51
Ending Page	59
Page Count	9
File Format	PDF
ISBN	9780769531595
ISSN	10874097
DOI	10.1109/PADS.2008.20
Language	English
Publisher	Association for Computing Machinery (ACM)
Publisher Date	2008-06-03
Access Restriction	Subscribed
Subject Keyword	Optimistic time management parallel distributed simulation aurora
Content Type	Text
Resource Type	Article

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in

Parallel and Distributed Spatial Simulation of Chemical Reactions

22nd Workshop on Principles of Advanced and Distributed Simulation Parallel and Distributed Spatial Simulation of Chemical Reactions

Parallel distributed simulation and modeling methods: an algorithm for fully-reversible optimistic parallel simulation

Optimistic distributed simulation based on transitive dependency tracking

Fine-grained parallel and distributed spatial stochastic simulation of biological reactions

Time-stamp generation for optimistic parallel computing (1995).

Improving performance of optimistic simulation for distributed simulation system using speculative computation

A Performance Evaluation of the Lightweight Time Warp Protocol in Optimistic Parallel Simulation of DEVS-Based Environmental Models

Lightweight Time Warp– A Novel Protocol for Parallel Optimistic Simulation of Large-Scale DEVS and Cell-DEVS Models

Parallel and Distributed Spatial Simulation of Chemical Reactions

Similar Documents

Parallel and Distributed Spatial Simulation of Chemical Reactions

22nd Workshop on Principles of Advanced and Distributed Simulation Parallel and Distributed Spatial Simulation of Chemical Reactions

Parallel distributed simulation and modeling methods: an algorithm for fully-reversible optimistic parallel simulation

Optimistic distributed simulation based on transitive dependency tracking

Fine-grained parallel and distributed spatial stochastic simulation of biological reactions

Time-stamp generation for optimistic parallel computing (1995).

Improving performance of optimistic simulation for distributed simulation system using speculative computation

A Performance Evaluation of the Lightweight Time Warp Protocol in Optimistic Parallel Simulation of DEVS-Based Environmental Models

Lightweight Time Warp– A Novel Protocol for Parallel Optimistic Simulation of Large-Scale DEVS and Cell-DEVS Models

Parallel and Distributed Spatial Simulation of Chemical Reactions