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  1. Proceedings of the 3rd international workshop on Emerging computational methods for the life sciences (ECMLS '12)
  2. Workflow as a service: an approach to workflow farming
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Image-based biomedical modeling, simulation and visualization
Workflow as a service: an approach to workflow farming
Understanding mapreduce-based next-generation sequencing alignment on distributed cyberinfrastructure
Accelerating virtual high-throughput ligand docking: screening one million compounds using a petascale supercomputer
Visualizing the protein sequence universe
HyMR: a hybrid MapReduce workflow system
Information-theoretic analysis of molecular (co)evolution using graphics processing units
Accelerating tandem MS protein database searches using OpenCL
An iterative parameter estimation method for biological systems
A lightweight platform for managing biomedical simulation

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Workflow as a service: an approach to workflow farming

Content Provider ACM Digital Library
Author Korkhov, Vladimir Belloum, Adam S.Z. Bubak, Marian Cushing, Reginald Vasyunin, Dmitry Leguy, Carole
Abstract Task farming is often used to enable parameter sweep for exploration of large sets of initial conditions for large scale complex simulations. Available solutions enable to perform parameter sweep by creating multiple grid job submissions with different parameters. This paper presents an approach to farm grid workflows with a web service based workflow management system, called WS-VLAM, which provides ways to create, control and monitor workflows applications and their components. An approach to balance the workload between the workflow instances and to collect provenance data at both system and workflow levels is also discussed. Finally, an experimental evaluation of the presented solution is performed with a biomedical application for which 3000 simulations were required to perform a Monte-Carlo study.
Starting Page 23
Ending Page 31
Page Count 9
File Format PDF
ISBN 9781450313391
DOI 10.1145/2483954.2483960
Language English
Publisher Association for Computing Machinery (ACM)
Publisher Date 2012-06-18
Publisher Place New York
Access Restriction Subscribed
Subject Keyword Provenance Parameter sweeps Distributed workloads Farming tasks Scientific workflows
Content Type Text
Resource Type Article
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