NDLI logo
  • Content
  • Similar Resources
  • Metadata
  • Cite This
  • Log-in
  • Fullscreen
Log-in
Do not have an account? Register Now
Forgot your password? Account recovery
  1. Proceedings of the 2015 International Workshop on Software Engineering for High Performance Computing in Science (SE4HPCS '15)
  2. Computation for genomics knowledge discovery
Loading...

Please wait, while we are loading the content...

Supporting scientists in re-engineering sequential programs to parallel using model-driven engineering
Computation for genomics knowledge discovery
Development of scientific software for HPC architectures using OpenACC: the case of LQCD
Towards an engineering methodology for multi-model scientific simulations
A scientific function test framework for modular environmental model development: application to the community land model
Ensuring an effective user experience when managing and running scientific HPC software
Commit quality in five high performance computing projects
Using software engineering methodologies to port a scientific code to GPUs: experiences and lessons learned: position paper
Regression testing of GPU/MIC systems for HPCC
SIMPL: a pattern language for writing efficient kernels on GPGPU

Similar Documents

...
Computation for Genomics Knowledge Discovery

Article

...
Improving Algorithms for Knowledge Discovery in Genetics Databases

Article

...
Knowledge Discovery from Genomics Microarrays

Article

...
Enhancing Knowledge Discovery from Cancer Genomics Data with Galaxy

Preprint

...
The Structural Genomics Consortium: A Knowledge Platform for Drug Discovery: A Summary.

Article

...
Integration of knowledge-discovery and artificial-intelligence approaches for promoter recognition in DNA sequences

Article

...
Parameter optimization of an evolutionary algorithm for RNA structure discovery

Article

...
Agent-Based Knowledge Discovery for Modeling & Simulation

Article

...
LearnMiner: deductive, tolerant agents for discovering didactic resources on the web

Article

Computation for genomics knowledge discovery

Content Provider ACM Digital Library
Author Butler, Greg
Abstract Knowledge discovery in genomics involves large scale graph processing and inference which is different from high-performance computing in genomics for sequence analysis. Genomics datasets are becoming increasing large and varied due to advances in biotechnology. Traditional sequence analysis therefore is computation-intensive for tasks such as assembly of reads, mapping reads to genomes, variation analysis across genomes, sequence similarity, sequence clustering, phylogenetics, and sequence motif and pattern finding. Beyond these data analysis steps come annotation steps to determine genes and their roles. This is knowledge discovery by inference from experimentally characterized genes, with provenance tracking the evidence for and against the annotation, post-processing by rules to catch systematic errors in annotation, gap-filling in systems biology network models, and propagation of changes in our knowledge of experimentally characterized genes. How can we engineer software for these kinds of systems that require high performance computing?.
Starting Page 46
Ending Page 50
Page Count 5
File Format PDF
Language English
Publisher Association for Computing Machinery (ACM)
Publisher Date 2015-05-16
Access Restriction Subscribed
Content Type Text
Resource Type Article
  • About
  • Disclaimer
  • Feedback
  • Sponsor
  • Contact
  • Chat with Us
About National Digital Library of India (NDLI)
NDLI logo

National Digital Library of India (NDLI) is a virtual repository of learning resources which is not just a repository with search/browse facilities but provides a host of services for the learner community. It is sponsored and mentored by Ministry of Education, Government of India, through its National Mission on Education through Information and Communication Technology (NMEICT). Filtered and federated searching is employed to facilitate focused searching so that learners can find the right resource with least effort and in minimum time. NDLI provides user group-specific services such as Examination Preparatory for School and College students and job aspirants. Services for Researchers and general learners are also provided. NDLI is designed to hold content of any language and provides interface support for 10 most widely used Indian languages. It is built to provide support for all academic levels including researchers and life-long learners, all disciplines, all popular forms of access devices and differently-abled learners. It is designed to enable people to learn and prepare from best practices from all over the world and to facilitate researchers to perform inter-linked exploration from multiple sources. It is developed, operated and maintained from Indian Institute of Technology Kharagpur.

Learn more about this project from here.

Disclaimer

NDLI is a conglomeration of freely available or institutionally contributed or donated or publisher managed contents. Almost all these contents are hosted and accessed from respective sources. The responsibility for authenticity, relevance, completeness, accuracy, reliability and suitability of these contents rests with the respective organization and NDLI has no responsibility or liability for these. Every effort is made to keep the NDLI portal up and running smoothly unless there are some unavoidable technical issues.

Feedback

Sponsor

Ministry of Education, through its National Mission on Education through Information and Communication Technology (NMEICT), has sponsored and funded the National Digital Library of India (NDLI) project.

Contact National Digital Library of India
Central Library (ISO-9001:2015 Certified)
Indian Institute of Technology Kharagpur
Kharagpur, West Bengal, India | PIN - 721302
See location in the Map
03222 282435
Mail: support@ndl.gov.in
Sl. Authority Responsibilities Communication Details
1 Ministry of Education (GoI),
Department of Higher Education
Sanctioning Authority https://www.education.gov.in/ict-initiatives
2 Indian Institute of Technology Kharagpur Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project https://www.iitkgp.ac.in
3 National Digital Library of India Office, Indian Institute of Technology Kharagpur The administrative and infrastructural headquarters of the project Dr. B. Sutradhar  bsutra@ndl.gov.in
4 Project PI / Joint PI Principal Investigator and Joint Principal Investigators of the project Dr. B. Sutradhar  bsutra@ndl.gov.in
Prof. Saswat Chakrabarti  will be added soon
5 Website/Portal (Helpdesk) Queries regarding NDLI and its services support@ndl.gov.in
6 Contents and Copyright Issues Queries related to content curation and copyright issues content@ndl.gov.in
7 National Digital Library of India Club (NDLI Club) Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach clubsupport@ndl.gov.in
8 Digital Preservation Centre (DPC) Assistance with digitizing and archiving copyright-free printed books dpc@ndl.gov.in
9 IDR Setup or Support Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops idr@ndl.gov.in
I will try my best to help you...
Cite this Content
Loading...