NDLI: Domain-specific languages for composing signature discovery workflows

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Domain-specific languages for composing signature discovery workflows

Content Provider	ACM Digital Library
Author	Wynne, Adam Jacob, Ferosh Baker, Nathan Liu, Yan Gray, Jeff
Abstract	Domain-agnostic signature discovery entails study across multiple scientific disciplines. The cross-disciplinary nature and breadth of this work requires that existing executable applications be integrated with new capabilities into workflows, representing a wide range of user tasks. An algorithm may be written in multiple programming languages for various hardware platforms, and so workflow composition requires integrating executables from any number of remote hosts. This raises an engineering issue on how to generate web service wrappers for these heterogeneous executables and to compose them into a scientific workflow environment (e.g., Taverna). In this position paper, we summarize our work on two simple Domain-Specific Languages (DSLs) that automate these processes. Our Service Description Language (SDL) describes key elements of a signature discovery service and automatically generates its implementation code. The Workflow Description Language (WDL) describes the pipeline of services and generates deployable artifacts for the Taverna workflow management system. We demonstrate our approach with a real-world workflow composed of services wrapping remote executables.
Starting Page	61
Ending Page	64
Page Count	4
File Format	PDF
ISBN	9781450316347
DOI	10.1145/2420918.2420934
Language	English
Publisher	Association for Computing Machinery (ACM)
Publisher Date	2012-10-22
Publisher Place	New York
Access Restriction	Subscribed
Subject Keyword	Workflow Sdl Modeling Wdl
Content Type	Text
Resource Type	Article

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