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2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

2013 IEEE International Conference on Bioinformatics and Biomedicine

2012 IEEE International Conference on Bioinformatics and Biomedicine

2011 IEEE International Conference on Bioinformatics and Biomedicine

2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Table of contents

Predicting DNA-binding locations and orientation on proteins using knowledge-based learning of geometric properties

Classification of genome-wide copy number variations and their associated SNP and gene networks analysis

Prediction of low coverage prone regions for Illumina sequencing projects using a support vector machine

Protein-protein interaction prediction using desolvation energies and interface properties

Prediction of DNA-binding protein based on alpha shape modeling

Gene cluster profile vectors: A novel method to infer functional coupling using both gene proximity and co-occurrence profiles

Phylogenetic reconstruction with gene rearrangements and gene losses

Detecting SNPs-disease associations using Bayesian networks

Accurate prediction of ATP-binding residues using sequence and sequence-derived structural descriptors

Unsupervised integration of multiple protein disorder predictors

Sequence and structural features of binding site residues in protein-protein complexes

Structural parsimony: Reductions in sequence space

Protein-protein interaction prediction via Collective Matrix Factorization

Characterization of structural features for small regulatory RNAs in Escherichia coli genomes

Prediction of Protein-RNA interaction site using SVM-KNN algorithm with spatial information

Enhanced reference guided assembly

A possible mutation that enables H1N1 influenza a virus to escape antibody recognition

CEO a cloud epistasis computing model in GWAS

A new perspective of integrative genome-wide association analysis considering trans eSNP effect

MetaPhyler: Taxonomic profiling for metagenomic sequences

MiRNAs as promising phylogenetic markers for inferring deep metazoan phylogeny and in support of Olfactores hypothesis

alns — A searchable and filterable sequence alignment format

Protein 8-class secondary structure prediction using Conditional Neural Fields

Truncation of protein sequences for fast profile alignment with application to subcellular localization

CAMBer: An approach to support comparative analysis of multiple bacterial strains

Template-based scoring functions for visualizing biological insights of $H-2K^{b}-peptide-TCR$ complexes

An algorithm for mapping short reads to a dynamically changing genomic sequence

A parallel multi-objective ab initio approach for protein structure prediction

NetLoc: Network based protein localization prediction using protein-protein interaction and co-expression networks

Probabilistic topic modeling for genomic data interpretation

Identification and quantification of abundant species from pyrosequences of 16S rRNA by consensus alignment

Predicting ligand binding residues using multi-positional correlations and kernel canonical correlation analysis

Detection of splicing events and multiread locations from RNA-seq data based on a geometric-tail (GT) distribution of intron length

Evaluation of short read metagenomic assembly

A probabilistic framework for inferring ancestral genomic orders

An accurate classification of native and non-native protein-protein interactions using supervised and semi-supervised learning approaches

Fuzzy C-means method with empirical mode decomposition for clustering microarray data

Overcoming drug resistance by co-targeting

SoyMetDB: The soybean metabolome database

Machine learning approaches for the investigation of features beyond seed matches affecting miRNA binding

A non-parameter Ising model for network-based identification of differentially expressed genes in recurrent breast cancer patients

Utilizing Cox regression model to assess the relations between predefined gene sets and the survival outcome of lung adenocarcinoma

Iterative correction of suppressed peptide profiles from FTMS measurements

Outcomes of gene association analysis of cancer microarray data are impacted by pre-processing algorithms

Peptide charge state determination of tandem mass spectra from low-resolution collision induced dissociation

Finding optimal control policy in Probabilistic Boolean Networks with hard constraints by using integer programming and dynamic programming

Semi-supervised learning protein complexes from protein interaction networks

Discovering functional gene pathways associated with cancer heterogeneity via sparse supervised learning

Prediction of human protein kinase substrate specificities

Sparse nonnegative matrix factorization with the elastic net

Unsupervised discovery of fuzzy patterns in gene expression data

A two-stage machine learning approach for pathway analysis

Decomposing PPI networks for complex discovery

Concurrent analysis of copy number variations and expression profiles to identify genes associated with tumorigenesis and survival outcome in lung adenocarcinoma

Ontology integration to identify protein complex in protein interaction networks

A procedure for identifying master regulators in conjunction with network screening and inference

Stochastic gene expression modeling with hill function for switch-like gene responses

Multi-objective evolutionary algorithms based Interpretable Fuzzy models for microarray gene expression data analysis

An ensemble method for querying gene expression compendia with experimental lists

Correlating CpG islands, motifs, and sequence variants in human chromosome 21

A supervised learning approach to the unsupervised clustering of genes

Structure identification and parameter estimation of biological s-systems

An Iterated Conditional Modes solution for sparse Bayesian factor modeling of transcriptional regulatory networks

Global analysis of miRNA target genes in colon rectal cancer

A new method for alignment of LC-MALDI-TOF data

Module-based biomarker discovery in breast cancer

A graph-based elastic net for variable selection and module identification for genomic data analysis

Cis-regulatory module detection using constraint programming

A generalized sequence pattern matching algorithm using complementary dual-seeding

Integrated analysis of the various types of microarray data using linear-mixed effects models

A dynamic qualitative probabilistic network approach for extracting gene regulatory network motifs

A parameterless automatic spot detection method for cDNA microarray images

An accurate, automatic method for markerless alignment of electron tomographic images

Spatially constrained fuzzy hyper-prototype clustering with application to brain tissue segmentation

Exploring matrix factorization techniques for significant genes identification of microarray dataset

Hybrid SVM/CART classification of pathogenic species of bacterial meningitis with surface-enhanced Raman scattering

Improved mammographic mass retrieval performance using multi-view information

A fast and noise-adaptive rough-fuzzy hybrid algorithm for medical image segmentation

Sparse canonical correlation analysis applied to fMRI and genetic data fusion

Solving training issues in the application of the wavelet transform to precisely analyze human body acceleration signals

A Naïve Bayes classifier for differential diagnosis of Long QT Syndrome in children

Non-negative matrix and tensor factorization based classification of clinical microarray gene expression data

Improving robustness of gene ranking by resampling and permutation based score correction and normalization

Autoregressive modeling of DNA features for short exon recognition

Hierarchical decomposition of vessel skeletons for graph creation and feature extraction

Semi-supervised feature learning from clinical text

Predicting human microRNA-disease associations based on support vector machine

A sparse regulatory network of copy-number driven expression reveals putative breast cancer oncogenes

Network-based identification of smoking-associated gene signature for lung cancer

Detection and application of CagA sequence markers for assessing risk factor of gastric cancer caused by Helicobacter pylori

Discovering negative correlated gene sets from integrative gene expression data for cancer prognosis

A gene ranking method using text-mining for the identification of disease related genes

A novel reinforcement learning framework for online adaptive seizure prediction

Metabolomic profiling for biomarker discovery in pancreatic cancer

Intracranial pressure level prediction in traumatic brain injury by extracting features from multiple sources and using machine learning methods

Exploitation of 3D Stereotactic Surface Projection for automated classification of Alzheimer's disease according to dementia levels

Gene selection using 1-norm regularization for multi-class microarray data

Eigenspectra, a robust regression method for multiplexed Raman spectra analysis

A new method for measuring the semantic similarity on gene ontology

seGOsa: Software environment for gene ontology-driven similarity assessment

Examining the sublineage structure of Mycobacterium tuberculosis complex strains with multiple-biomarker tensors

Two-stage clustering based effective sample selection for classification of pre-miRNAs

Biomedical concept extraction using concept graphs and ontology-based mapping

Identification of critical location on a microstructural bone network

An automatic procedure to search highly repetitive sequences in genome as fluorescence in situ hybridization probes and its application on Brachypodium distachyon

Exploratory analysis of the BioAssay Network with implications to therapeutic discovery

Link-based cluster ensembles for heterogeneous biological data analysis

FluRF, an automated flu virus reassortment finder based on phylogenetic trees

Decomposing protein interactome networks by graph entropy

NWE: Node-weighted expansion for protein complex prediction using random walk distances

Ranking SVM for multiple kernels output combination in protein-protein interaction extraction from biomedical literature

Concurrent analysis of copy number variation and gene expression: Application in paired non-smoking female lung cancer patients

Robust hidden semi-Markov modeling of array CGH data

Computational modeling of phagocyte transmigration during biomaterial-mediated foreign body responses

Rex: A toolset for reproducing software experiments

A comparative study of two matrix factorization methods applied to the classification of gene expression data

Time- and space-efficient maximal repeat finding using the burrows-wheeler transform and wavelet trees

IsoKEGG: A logic based system for querying biological pathways in KEGG

Feature selection for graph kernels

Toward automatically drawn metabolic pathway atlas with peripheral node abstraction algorithm

An Evolutionary Monte Carlo algorithm for identifying short adjacent repeats in multiple sequences

Gene expression rule discovery with a multi-objective neural-genetic hybrid

Represented indicator measurement and corpus distillation on focus species detection

PSI-RA: A parallel sparse index for read alignment on genomes

Exploring a multi-source fusion approach for genomics information retrieval

GPU-based triangulation of the van der Waals surface

Selecting informative genes by Lasso and Dantzig selector for linear classifiers

Scalable, updatable predictive models for sequence data

Computational prediction of toxicity

A relevance-novelty combined model for genomics search result diversification

Gene clustering by structural prior based local factor analysis model under Bayesian Ying-Yang harmony learning

2009 IEEE International Conference on Bioinformatics and Biomedicine

2008 IEEE International Conference on Bioinformatics and Biomedicine

2007 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2007)

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3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
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